Evolutionary Construction of Multiple Graph Alignments for the Structural Analysis of Biomolecules. - Thomas Fober; Eyke Hüllermeier; Marco Mernberger (German Conference on Bioinformatics, 2008)

Evolutionary Construction of Multiple Graph Alignments for Mining Structured Biomolecular Data. - Thomas Fober; Eyke Hüllermeier; Marco Mernberger (LWA, 2008)

Fuzzy Modeling of Labeled Point Cloud Superposition for the Comparison of Protein Binding Sites. - Thomas Fober; Eyke Hüllermeier (IFSA/EUSFLAT Conf., 2009)

Graph-Kernels for the Comparative Analysis of Protein Active Sites. - Thomas Fober; Marco Mernberger; Ralph Moritz; Eyke Hüllermeier (GCB, 2009)

Similarity Analysis of Protein Binding Sites: A Generalization of the Maximum Common Subgraph Measure Based on Quasi-Clique Detection. - Imen Boukhris; Zied Elouedi; Thomas Fober; Marco Mernberger; Eyke Hüllermeier (ISDA, 2009)

Efficient Construction of Multiple Geometrical Alignments for the Comparison of Protein Binding Sites. - Thomas Fober; Gerhard Klebe; Eyke Hüllermeier (ISDA, 2009)

Extension and Empirical Comparison of Graph-Kernels for the Analysis of Protein Active Sites. - Thomas Fober; Marco Mernberger; Vitalik Melnikov; Ralph Moritz; Eyke Hüllermeier (LWA, 2009)

Evolutionary construction of multiple graph alignments for the structural analysis of biomolecules. - Thomas Fober; Marco Mernberger; Gerhard Klebe; Eyke Hüllermeier (Bioinform., 2009)

Fuzzy Operator Trees for Modeling Rating Functions. - Yu Yi; Thomas Fober; Eyke Hüllermeier (Int. J. Comput. Intell. Appl., 2009)

Similarity measures for protein structures based on fuzzy histogram comparison. - Thomas Fober; Eyke Hüllermeier (FUZZ-IEEE, 2010)

Efficient Similarity Retrieval of Protein Binding Sites based on Histogram Comparison. - Thomas Fober; Marco Mernberger; Gerhard Klebe; Eyke Hüllermeier (GCB, 2010)

GARLig: A Fully Automated Tool for Subset Selection of Large Fragment Spaces via a Self-Adaptive Genetic Algorithm. - Patrick Pfeffer; Thomas Fober; Eyke Hüllermeier; Gerhard Klebe (J. Chem. Inf. Model., 2010)

Superposition and Alignment of Labeled Point Clouds. - Thomas Fober; Serghei Glinca; Gerhard Klebe; Eyke Hüllermeier (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

GPU-based Cloud computing for comparing the structure of protein binding sites. - Matthias Leinweber; Lars Baumgärtner; Marco Mernberger; Thomas Fober; Eyke Hüllermeier; Gerhard Klebe; Bernd Freisleben (DEST, 2012)

Fuzzy Pattern Trees: Ein alternativer Ansatz zur Fuzzy-Modellierung. - Robin Senge; Thomas Fober; Maryam Nasiri; Eyke Hüllermeier (Autom., 2012)

Fuzzy pattern trees as an alternative to rule-based fuzzy systems: Knowledge-driven, data-driven and hybrid modeling of color yield in polyester dyeing. - Maryam Nasiri; Thomas Fober; Robin Senge; Eyke Hüllermeier (IFSA/NAFIPS, 2013)

Extended graph-based models for enhanced similarity retrieval in Cavbase. - Timo Krotzky; Thomas Fober; Marco Mernberger; Gerhard Klebe; Eyke Hüllermeier (J. Cheminformatics, 2013)

Graph-based methods for protein structure comparison. - Thomas Fober; Marco Mernberger; Gerhard Klebe; Eyke Hüllermeier (WIREs Data Mining Knowl. Discov., 2013)

Geometric, Feature-based and Graph-based Approaches for the Structural Analysis of Protein Binding Sites : Novel Methods and Computational Analysis. - Thomas Fober (2013)

Local Clique Merging: An Extension of the Maximum Common Subgraph Measure with Applications in Structural Bioinformatics. - Thomas Fober; Gerhard Klebe; Eyke Hüllermeier (Algorithms from and for Nature and Life, 2013)

Extraction of Protein Binding Pockets in Close Neighborhood of Bound Ligands Makes Comparisons Simple Due to Inherent Shape Similarity. - Timo Krotzky; Thomas Rickmeyer; Thomas Fober; Gerhard Klebe (J. Chem. Inf. Model., 2014)

Extended Graph-Based Models for Enhanced Similarity Search in Cavbase. - Timo Krotzky; Thomas Fober; Eyke Hüllermeier; Gerhard Klebe (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Identification of Functionally Related Enzymes by Learning-to-Rank Methods. - Michiel Stock; Thomas Fober; Eyke Hüllermeier; Serghei Glinca; Gerhard Klebe; Tapio Pahikkala; Antti Airola; Bernard De Baets; Willem Waegeman (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

CavSimBase: A Database for Large Scale Comparison of Protein Binding Sites. - Matthias Leinweber; Thomas Fober; Marc Strickert; Lars Baumgärtner; Gerhard Klebe; Bernd Freisleben; Eyke Hüllermeier (IEEE Trans. Knowl. Data Eng., 2016)

A Linear-Time Algorithm for the Aggregation and Visualization of Big Spatial Point Data. - Christian Beilschmidt; Thomas Fober; Michael Mattig; Bernhard Seeger (SIGSPATIAL/GIS, 2017)

Quality Measures for Visual Point Clustering in Geospatial Mapping. - Christian Beilschmidt; Thomas Fober; Michael Mattig; Bernhard Seeger (W2GIS, 2017)

Kernel-Based Cardinality Estimation on Metric Data. - Michael Mattig; Thomas Fober; Christian Beilschmidt; Bernhard Seeger (EDBT, 2018)

GPU-Based Point Cloud Superpositioning for Structural Comparisons of Protein Binding Sites. - Matthias Leinweber; Thomas Fober; Bernd Freisleben (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

An Efficient Method for Exploratory Data Visualization of Big Spatial Data on Commodity Hardware. - Christian Beilschmidt; Michael Mattig; Thomas Fober; Bernhard Seeger (GI-Jahrestagung, 2019)

An efficient aggregation and overlap removal algorithm for circle maps. - Christian Beilschmidt; Michael Mattig; Thomas Fober; Bernhard Seeger (GeoInformatica, 2019)