MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates. - Andre R. O. Cavalcanti; Thomas H. Clarke; Laura F. Landweber (Nucleic Acids Res., 2005)

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models. - Thomas H. Clarke; Lauren M. Brinkac; Granger G. Sutton; Derrick E. Fouts (Bioinform., 2018)

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes. - Thomas H. Clarke; Lauren M. Brinkac; Jason M. Inman; Granger G. Sutton; Derrick E. Fouts (BMC Bioinform., 2018)

Large-scale comparative analysis of microbial pan-genomes using PanOCT. - Jason M. Inman; Granger G. Sutton; Erin Beck; Lauren M. Brinkac; Thomas H. Clarke; Derrick E. Fouts (Bioinform., 2019)