MetaPath Online: a web server implementation of the network expansion algorithm. - Thomas Handorf; Oliver Ebenhöh (Nucleic Acids Res., 2007)

Functional Classification of Genome-Scale Metabolic Networks. - Oliver Ebenhöh; Thomas Handorf (EURASIP J. Bioinform. Syst. Biol., 2009)

Modeling mechanistic biological networks: An advanced Boolean approach. - Thomas Handorf; Edda Klipp (Bioinform., 2012)

Biographer: web-based editing and rendering of SBGN compliant biochemical networks. - Falko Krause; Marvin Schulz; Ben Ripkens; Max Flöttmann; Marcus Krantz; Edda Klipp; Thomas Handorf (Bioinform., 2013)