ESTAnnotator: a tool for high throughput EST annotation. - Agnes Hotz-Wagenblatt; Thomas Hankeln; Peter Ernst; Karl-Heinz Glatting; Erwin R. Schmidt; Sándor Suhai (Nucleic Acids Res., 2003)

The mitochondrial DNA of Xenoturbella bocki: genomic architecture and phylogenetic analysis. - Marleen Perseke; Thomas Hankeln; Bettina Weich; Guido Fritzsch; Peter F. Stadler; Olle Israelsson; Detlef Bernhard; Martin Schlegel (Theory Biosci., 2007)

Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data. - Yongchao Liu; Thomas Hankeln; Bertil Schmidt (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

AFS: identification and quantification of species composition by metagenomic sequencing. - Yongchao Liu; Fabian Ripp; Rene Koeppel; Hanno Schmidt; Sören Lukas Hellmann; Mathias Weber; Christopher Felix Krombholz; Bertil Schmidt; Thomas Hankeln (Bioinform., 2017)

MetaCache: context-aware classification of metagenomic reads using minhashing. - André Müller; Christian Hundt 002; Andreas Hildebrandt 001; Thomas Hankeln; Bertil Schmidt (Bioinform., 2017)

A big data approach to metagenomics for all-food-sequencing. - Robin Kobus; José Manuel Abuín; André Müller; Sören Lukas Hellmann; Juan Carlos Pichel; Tomás F. Pena; Andreas Hildebrandt 001; Thomas Hankeln; Bertil Schmidt (BMC Bioinform., 2020)

RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads. - Stefan Niebler; André Müller; Thomas Hankeln; Bertil Schmidt (BMC Bioinform., 2020)