Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data. - Jan Krumsiek; Karsten Suhre; Thomas Illig; Jerzy Adamski; Fabian J. Theis (BMC Syst. Biol., 2011)

A comparison of curated gene sets versus transcriptomics-derived gene signatures for detecting pathway activation in immune cells. - Bin Liu 073; Patrick Lindner; Adan Chari Jirmo; Ulrich Maus; Thomas Illig; David S. DeLuca (BMC Bioinform., 2020)

The Importance of Being FAIR and FAST - The Clinical Epidemiology and Study Platform of the German Network University Medicine (NUKLEUS). - Dagmar Krefting; Gabi Anton; Irina Chaplinskaya-Sobol; Sabine Hanß; Wolfgang Hoffmann 001; Sina M. Hopff; Monika Kraus; Roberto Lorbeer; Bettina Lorenz-Depiereux; Thomas Illig; Christian Schäfer; Jens Schaller; et al. (MIE, 2023)

A variational autoencoder trained with priors from canonical pathways increases the interpretability of transcriptome data. - Bin Liu 073; Bodo Rosenhahn; Thomas Illig; David S. DeLuca (PLoS Comput. Biol., 2024)