Combinatorics of γ-Structures. - Hillary S. W. Han; Thomas J. X. Li; Christian M. Reidys (J. Comput. Biol., 2014)

RNA Secondary Structures Having a Compatible Sequence of Certain Nucleotide Ratios. - Christopher L. Barrett; Thomas J. X. Li; Christian M. Reidys (J. Comput. Biol., 2016)

On an enhancement of RNA probing data using information theory. - Thomas J. X. Li; Christian M. Reidys (Algorithms Mol. Biol., 2020)

Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution. - Christopher L. Barrett; Andrei C. Bura; Qijun He; Fenix W. D. Huang; Thomas J. X. Li; Michael S. Waterman; Christian M. Reidys (J. Comput. Biol., 2021)

A computational framework for weighted simplicial homology. - Andrei C. Bura; Neelav S. Dutta; Thomas J. X. Li; Christian M. Reidys (CoRR, 2022)