FPGA acceleration of reference-based compression for genomic data. - James Arram; Moritz Pflanzer; Thomas Kaplan; Wayne Luk (FPT, 2015)

Leveraging FPGAs for Accelerating Short Read Alignment. - James Arram; Thomas Kaplan; Wayne Luk; Peiyong Jiang (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Detecting Low Frequency Oscillations in Cardiovascular Signals Using Gradient Frequency Neural Networks. - Thomas Kaplan; Elaine Chew (CinC, 2019)

Modeling enculturated bias in entrainment to rhythmic patterns. - Thomas Kaplan; Jonathan Cannon; Lorenzo Jamone; Marcus T. Pearce (PLoS Comput. Biol., 2022)