Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases. - Duccio Cavalieri; Cinzia Castagnini; Simona Toti; Karolina Maciag; Thomas Kelder; Luca Gambineri; Samuele Angioli; Piero Dolara (Bioinform., 2007)

Presenting and exploring biological pathways with PathVisio. - Martijn P. van Iersel; Thomas Kelder; Alexander R. Pico; Kristina Hanspers; Susan L. Coort; Bruce R. Conklin; Chris T. A. Evelo (BMC Bioinform., 2008)

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. - Martijn P. van Iersel; Alexander R. Pico; Thomas Kelder; Jianjiong Gao; Isaac Ho; Kristina Hanspers; Bruce R. Conklin; Chris T. A. Evelo (BMC Bioinform., 2010)

Exploring pathway interactions in insulin resistant mouse liver. - Thomas Kelder; Lars M. T. Eijssen; Robert Kleemann; Marjan van Erk; Teake Kooistra; Chris T. A. Evelo (BMC Syst. Biol., 2011)

WikiPathways: building research communities on biological pathways. - Thomas Kelder; Martijn P. van Iersel; Kristina Hanspers; Martina Kutmon; Bruce R. Conklin; Chris T. A. Evelo; Alexander R. Pico (Nucleic Acids Res., 2012)

Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters. - Thomas Kelder; Lars Verschuren; Ben van Ommen; Alain J. van Gool; Marijana Radonjic (BMC Syst. Biol., 2014)

cyNeo4j: connecting Neo4j and Cytoscape. - Georg Summer; Thomas Kelder; Keiichiro Ono; Marijana Radonjic; Stephane Heymans; Barry Demchak (Bioinform., 2015)

PathVisio 3: An Extendable Pathway Analysis Toolbox. - Martina Kutmon; Martijn P. van Iersel; Anwesha Bohler; Thomas Kelder; Nuno Nunes 002; Alexander R. Pico; Chris T. A. Evelo (PLoS Comput. Biol., 2015)

The Network Library: a framework to rapidly integrate network biology resources. - Georg Summer; Thomas Kelder; Marijana Radonjic; Marc van Bilsen; Suzan Wopereis; Stephane Heymans (Bioinform., 2016)

Supporting Reuse of EHR Data in Healthcare Organizations: The CARED Research Infrastructure Framework. - Vincent Jorn Menger; Marco Spruit; Jonathan de Bruin; Thomas Kelder; Floor Scheepers (HEALTHINF, 2019)