A Formal Model of Distributed Decision-Making and Its Application to Distributed Load Balancing. - Thomas L. Casavant; Jon G. Kuhl (ICDCS, 1986)

Analysis of Three Dynamic Distributed Load-Balancing Strategies with Varying Global Information Requirements. - Thomas L. Casavant; Jon G. Kuhl (ICDCS, 1987)

Low-level programming of parallel supercomputers. - Thomas L. Casavant (COMPSAC, 1988)

Experimental analysis of SIMD recursive digital filtering on the PASM system prototype. - M. J. McPheters Jr.; Thomas L. Casavant (COMPSAC, 1988)

Non-Deterministic Instruction Time Experiments on the PASM System Prototype. - Samuel A. Fineberg; Thomas L. Casavant; Thomas Schwederski; Howard Jay Siegel (ICPP (1), 1988)

A Taxonomy of Scheduling in General-Purpose Distributed Computing Systems. - Thomas L. Casavant; Jon G. Kuhl (IEEE Trans. Software Eng., 1988)

Effects of Response and Stability on Scheduling in Distributed Computing Systems. - Thomas L. Casavant; Jon G. Kuhl (IEEE Trans. Software Eng., 1988)

A model for monitoring and debugging parallel and distributed software. - Dan C. Marinescu; James E. Lumpp Jr.; Thomas L. Casavant; Howard Jay Siegel (COMPSAC, 1989)

Software routing support for task migration in hypercube multiprocessor systems. - Michael A. McSherry; Thomas L. Casavant (COMPSAC, 1989)

Experimental analysis of multi-mode fast Fourier transforms on the PASM parallel processing system. - Edward C. Bronson; Thomas L. Casavant; Leah H. Jamieson (ICASSP, 1989)

Task Migration Transfers in Multistage Cube Based Parallel Systems. - Thomas Schwederski; Howard Jay Siegel; Thomas L. Casavant (ICPP (1), 1989)

Mathematical transformation of Petri-nets for development of parallel/distributed programs. - Yiannis E. Papelis; Thomas L. Casavant (COMPSAC, 1990)

Specification and Identification of Events for Debugging and Performance Monitoring of Distributed Multiprocessor Systems. - James E. Lumpp Jr.; Howard Jay Siegel; Dan C. Marinescu; Thomas L. Casavant (ICDCS, 1990)

Experimental Analysis of a Mixed-Mode Parallel Architecture Performing Sequence Sorting. - Samuel A. Fineberg; Thomas L. Casavant; Howard Jay Siegel (ICPP (3), 1990)

An Experimental Analysis of Image Correlation on Shared versus Non-Shared Memory MIMD Parallel Computers. - Silvio Picano; Thomas L. Casavant (ICPP (3), 1990)

Optimizing Task Migration Transfers Using Multistage Cube Networks. - Thomas Schwederski; Howard Jay Siegel; Thomas L. Casavant (ICPP (1), 1990)

Experimental analysis of communication/data-conditional aspects of a mixed-mode parallel architecture via synthetic computations. - Samuel A. Fineberg; Thomas L. Casavant; Howard Jay Siegel (SC, 1990)

Models for Monitoring and Debugging Tools for Parallel and Distributed Software. - Dan C. Marinescu; James E. Lumpp Jr.; Thomas L. Casavant; Howard Jay Siegel (J. Parallel Distributed Comput., 1990)

A Communicating Finite Automata Approach to Modeling Distributed Computation and Its Application to Distributed Decision-Making. - Thomas L. Casavant; Jon G. Kuhl (IEEE Trans. Computers, 1990)

Experimental Application-Driven Architecture Analysis of an SIMD/MIMD Parallel Processing System. - Edward C. Bronson; Thomas L. Casavant; Leah H. Jamieson (IEEE Trans. Parallel Distributed Syst., 1990)

Design of a system for software testing and debugging for multiprocessor avionics systems. - James E. Lumpp Jr.; Roger K. Shultz; Thomas L. Casavant (COMPSAC, 1991)

Co-scheduling compute-intensive tasks on a network of workstations: model and algorithms. - Mikhail J. Atallah; Christina Lock; Dan C. Marinescu; Howard Jay Siegel; Thomas L. Casavant (ICDCS, 1991)

Debugging and performance monitoring for distributed systems: problems and prospects. - Thomas L. Casavant; Peter C. Bates; Thomas Bemmerl; Gary M. Koob; Daniel A. Reed; Zary Segall (ICDCS, 1991)

Recovering Unconrupted Event Traces from Corrupted Event Traces in Parallel/Distributed Computing Systems. - Mark S. Andersland; Thomas L. Casavant (ICPP (2), 1991)

XPAT: An Interactive Graphical Tool for Synthesis of Concurrent Software Using Petri Nets. - Yiannis E. Papelis; Thomas L. Casavant (ICPP (2), 1991)

Use of PARADISE: A Meta-Tool for Visualizing Parallel Systems. - James Arthur Kohl; Thomas L. Casavant (IPPS, 1991)

CAPS: A Coding Aid For PASM. - James E. Lumpp Jr.; Samuel A. Fineberg; Wayne G. Nation; Thomas L. Casavant; Edward C. Bronson; Howard Jay Siegel; Pierre H. Pero; Thomas Schwederski; Dan C. Marinescu (Commun. ACM, 1991)

Distributed Computing Systems (Guest Editors' Introduction). - Mukesh Singhal; Thomas L. Casavant (Computer, 1991)

Experimental Analysis of a Mixed-Mode Parallel Architecture Using Bitonic Sequence Sorting. - Samuel A. Fineberg; Thomas L. Casavant; Howard Jay Siegel (J. Parallel Distributed Comput., 1991)

A software engineering, visualization methodology for parallel processing systems. - James Arthur Kohl; Thomas L. Casavant (COMPSAC, 1992)

A Preliminary Performance Evaluation of the Seamless Parallel Processing System Architecture. - Samuel A. Fineberg; Thomas L. Casavant (ICPP (1), 1992)

The Seamless Approach to Reconciling Communication and Locality in Distributed-Memory Parallel Systems. - Samuel A. Fineberg; Thomas L. Casavant; Brent H. Pease (IPPS, 1992)

Seamless - a latency-tolerant RISC-based multiprocessor architecture. - Samuel A. Fineberg; Thomas L. Casavant; Brent H. Pease (ISCA, 1992)

Models and Algorithms for Coscheduling Compute-Intensive Tasks on a Network of Workstations. - Mikhail J. Atallah; Christina Lock Black; Dan C. Marinescu; Howard Jay Siegel; Thomas L. Casavant (J. Parallel Distributed Comput., 1992)

Report of the Purdue Workshop on Grand Challenges in Computer Architecture for the Support of High Performance Computing. - Howard Jay Siegel; Seth Abraham; William L. Bain; Kenneth E. Batcher; Thomas L. Casavant; Doug DeGroot; Jack B. Dennis; David C. Douglas; Tse-Yun Feng; James R. Goodman; Alan Huang; Harry F. Jordan; et al. (J. Parallel Distributed Comput., 1992)

Specification and Analysis of Parallel/Distributed Software and Systems by Petri Nets With Transition Enabling Functions. - Yiannis E. Papelis; Thomas L. Casavant (IEEE Trans. Software Eng., 1992)

Critical Performance Path Analysis, and Efficient Code Generation Issues, for the Seamless Architecture. - D. L. Bright; Samuel A. Fineberg; Brent H. Pease; M. L. Roderick; S. Sundaram; Thomas L. Casavant (IPPS, 1993)

The IMPROV Meta-Tool Design Methodology for Visualization of Parallel Programs. - Thomas L. Casavant; James Arthur Kohl (MASCOTS, 1993)

Tools and Methods for Visualization of Parallel Systems and Computations - Guest Editor's Introduction. - Thomas L. Casavant (J. Parallel Distributed Comput., 1993)

Readings in distributed computing systems. - Thomas L. Casavant; Mukesh Singhal (IEEE, 1994)

Using Perturbation Tracking to Compensate for Intrusion in Message-Passing Systems. - Julie A. Gannon; K. J. Williams; Mark S. Andersland; J. E. Lummp Jr.; Thomas L. Casavant (ICDCS, 1994)

What Types of Research Papers Should We Be Writing? - Thomas L. Casavant; Chi-Yuan Chin; Wen-Tsuen Chen; Kang G. Shin; Earl E. Swartzlander Jr.; Joseph E. Urban (ICPADS, 1994)

Exploting communication Latency Hiding for Parallel Network. - Volker Strumpen; Thomas L. Casavant (ICPADS, 1994)

Trace Recovery in Multi-Processing Systems: Architectural Considerations. - Julie A. Gannon; K. J. Williams; Mark S. Andersland; Thomas L. Casavant; J. E. Lummp Jr. (ICPP (2), 1994)

Implementing communication latency hiding in high-latency computer networks. - Volker Strumpen; Thomas L. Casavant (HPCN Europe, 1995)

Perspectives for High Performance Computing in Workstation Networks. - Volker Strumpen; Balkrishna Ramkumar; Thomas L. Casavant; Sudhakar M. Reddy (HPCN Europe, 1996)

Mapping Techniques for Parallel Evaluation of Chains of Recurrences. - Eugene V. Zima; Karthi R. Vadivelu; Thomas L. Casavant (IPPS, 1996)

Accounting for Uncertainty in the Recovers of Traces for Parallel Computing Systems. - Todd E. Scheetz; Julie A. Gannon; Richard D. Dietz; Terry A. Braun; Thomas L. Casavant; Mark S. Andersland (Parcella, 1996)

Modeling the impact of run-time uncertainty on optimal computation scheduling using feedback. - Richard D. Dietz; Thomas L. Casavant; Todd E. Scheetz; Terry A. Braun; Mark S. Andersland (ICPP, 1997)

Using Run-Time Uncertainty to Robustly Schedule Parallel Computation. - Richard D. Dietz; Thomas L. Casavant; Todd E. Scheetz; Terry A. Braun; Mark S. Andersland (PaCT, 1997)

Perspectives on high performance network computing. - Volker Strumpen; Balkrishna Ramkumar; Thomas L. Casavant; Sudhakar M. Reddy (Future Gener. Comput. Syst., 1997)

GenoMap: A Distributed System for Unifying Genotyping and Genetic Linkage Analysis. - Todd E. Scheetz; Terry A. Braun; Kyle J. Munn; Edwin M. Stone; Val C. Sheffield; Thomas L. Casavant (Parallel Comput., 1998)

A Parallel/Distributed Srchitecture for Hierarcally Heterogeneous Web-Based Cooperative Applications. - Thomas L. Casavant; Todd E. Scheetz; Terry A. Braun; Kyle J. Munn; Sureshkumar Kaliannan (HPCN Europe, 1999)

Three Complementary Approaches to Parallelization of Local BLAST Service on Workstation Clusters (invited paper). - Kevin T. Pedretti; Thomas L. Casavant; R. C. Braun; Todd E. Scheetz; Clayton L. Birkett; Chad A. Roberts (PaCT, 1999)

I-DOCS: Distributed Agent-Assisted Knowledge Fusion for Disease Gene Discovery. - Andrew B. Williams; Todd A. Krygowski; Thomas L. Casavant (ICPADS, 2001)

A Parallel Expressed Sequence Tag (EST) Clustering Program. - Kevin T. Pedretti; Todd E. Scheetz; Terry A. Braun; Chad A. Roberts; Natalie L. Robinson; Thomas L. Casavant (PaCT, 2001)

Parallelization of local BLAST service on workstation clusters. - R. C. Braun; Kevin T. Pedretti; Thomas L. Casavant; Todd E. Scheetz; Clayton L. Birkett; Chad A. Roberts (Future Gener. Comput. Syst., 2001)

A parallel/distributed architecture for hierarchically heterogeneous web-based cooperative applications. - Thomas L. Casavant; Terry A. Braun; Sureshkumar Kaliannan; Todd E. Scheetz; Kyle J. Munn; Clayton L. Birkett (Future Gener. Comput. Syst., 2001)

Pooled library tissue tags for EST-based gene discovery. - Allen J. Gavin; Todd E. Scheetz; Chad A. Roberts; Brian O'Leary; Terry A. Braun; Val C. Sheffield; Marcelo Bento Soares; John P. Robinson; Thomas L. Casavant (Bioinform., 2002)

Parallel creation of non-redundant gene indices from partial mRNA transcripts. - Nishank Trivedi; Jared Bischof; Steve Davis; Kevin T. Pedretti; Todd E. Scheetz; Terry A. Braun; Chad A. Roberts; Natalie L. Robinson; Val C. Sheffield; Marcelo Bento Soares; Thomas L. Casavant (Future Gener. Comput. Syst., 2002)

Alternative Parallelization Strategies in EST Clustering. - Nishank Trivedi; Kevin T. Pedretti; Terry A. Braun; Todd E. Scheetz; Thomas L. Casavant (PaCT, 2003)

ESTprep: Preprocessing CDNA Sequence Reads. - Todd E. Scheetz; Nishank Trivedi; Chad A. Roberts; Tamara Kucaba; Brian Berger; Natalie L. Robinson; Clayton L. Birkett; Allen J. Gavin; Brian O'Leary; Terry A. Braun; Maria F. Bonaldo; John P. Robinson; et al. (Bioinform., 2003)

Identifying Candidate Disease Genes with High-Performance Computing. - Terry A. Braun; Todd E. Scheetz; Gregg Webster; Abe Clark; Edwin M. Stone; Val C. Sheffield; Thomas L. Casavant (J. Supercomput., 2003)

XenoCluster: A Grid Computing Approach to Finding Ancient Evolutionary Genetic Anomalies. - Jesse D. Walters; Thomas L. Casavant; John P. Robinson; Thomas B. Bair; Terry A. Braun; Todd E. Scheetz (PaCT, 2005)

Gene transcript clustering: a comparison of parallel approaches. - Todd E. Scheetz; Nishank Trivedi; Kevin T. Pedretti; Terry A. Braun; Thomas L. Casavant (Future Gener. Comput. Syst., 2005)

First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome. - Krishna R. Kalari; Melanie Casavant; Thomas B. Bair; Henry L. Keen; Josep M. Comeron; Thomas L. Casavant; Todd E. Scheetz (Silico Biol., 2006)

Transcript Annotation Prioritization and Screening System (TRApss) for Mutation Screening. - Brian O'Leary; Steven G. Davis; Michael F. Smith; Bartley Brown; Mathew B. Kemp; Hakeem G. Almabrazi; Jason A. Grundstad; Thomas Burns; Vladimir Leontiev; Jeaneen Andorf; Abbot F. Clark; Val C. Sheffield; et al. (J. Bioinform. Comput. Biol., 2007)

A knowledge-based approach to predict intragenic deletions or duplications. - Krishna R. Kalari; Thomas L. Casavant; Todd E. Scheetz (Bioinform., 2008)

Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application. - Jesse D. Walters; Thomas B. Bair; Terry A. Braun; Todd E. Scheetz; John P. Robinson; Thomas L. Casavant (PaCT, 2009)

Sequencing and disease variation detection tools and techniques. - Adam P. DeLuca; Alex H. Wagner; Kyle R. Taylor; Ben Faga; David Thole; Val C. Sheffield; Edwin M. Stone; Thomas L. Casavant; Todd E. Scheetz; Terry A. Braun (AICCSA, 2011)

AudioGene: Computer-based prediction of genetic factors involved in non-syndromic hearing impairment. - Kyle R. Taylor; Adam P. DeLuca; Corey W. Goodman; Bruce W. Tompkins; Todd E. Scheetz; Michael S. Hildebrand; Patrick L. M. Huygen; Richard J. H. Smith; Terry A. Braun; Thomas L. Casavant (AICCSA, 2011)

Validation of computational prediction of horizontal gene transfer events - XenoCluster. - Jesse D. Walters; Thomas B. Bair; Terry A. Braun; Todd E. Scheetz; John P. Robinson; Thomas L. Casavant (J. Supercomput., 2011)

Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data. - Jinlu Cai; Henry L. Keen; Curt D. Sigmund; Thomas L. Casavant (J. Integr. Bioinform., 2012)

Computational identification of operon-like transcriptional loci in eukaryotes. - Kishore Nannapaneni; Yehuda Ben-Shahar; Henry L. Keen; Michael J. Welsh; Thomas L. Casavant; Todd E. Scheetz (Comput. Biol. Medicine, 2013)

Cordova: Web-based management of genetic variation data. - Sean S. Ephraim; Nikhil Anand; Adam P. DeLuca; Kyle R. Taylor; Diana L. Kolbe; Allen C. Simpson; Hela Azaiez; Christina M. Sloan; A. Eliot Shearer; Andrea R. Hallier; Thomas L. Casavant; Todd E. Scheetz; et al. (Bioinform., 2014)

CNV-ROC: A cost effective, computer-aided analytical performance evaluator of chromosomal microarrays. - Corey W. Goodman; Heather J. Major; William D. Walls; Val C. Sheffield; Thomas L. Casavant; Benjamin W. Darbro (J. Biomed. Informatics, 2015)

Development of a radiobiological evaluation tool to assess the expected clinical impacts of contouring accuracy between manual and semi-automated segmentation algorithms. - Yusung Kim 003; Kaustubh Anil Patwardhan; Reinhard R. Beichel; Brian J. Smith; Christopher Mart; Kristin A. Plichta; Tangel Chang; Milan Sonka; Michael M. Graham; Vince Magnotta; Thomas L. Casavant; Junyi Xia; et al. (EMBC, 2017)

Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality. - Michael C. Rendleman; John M. Buatti; Terry A. Braun; Brian J. Smith; Chibuzo Nwakama; Reinhard R. Beichel; Bartley Brown; Thomas L. Casavant (BMC Bioinform., 2019)

Representative random sampling: an empirical evaluation of a novel bin stratification method for model performance estimation. - Michael C. Rendleman; Brian J. Smith; Guadalupe Canahuate; Terry A. Braun; John M. Buatti; Thomas L. Casavant (Stat. Comput., 2022)