Distributed Java Platform with Programmable MIMD Capabilities. - Thomas M. Keane; Richard Allen; Thomas J. Naughton; James O. McInerney; John Waldron (FIDJI, 2002)

Distributed computing for DNA analysis. - Thomas M. Keane; Richard Allen; Thomas J. Naughton; James O. McInerney; John Waldron (PPPJ/IRE, 2002)

Multi-tiered distributed computing platform. - Andrew J. Page; Thomas M. Keane; Richard Allen; Thomas J. Naughton; John Waldron (PPPJ, 2003)

Adaptive Scheduling across a Distributed Computation Platform. - Andrew J. Page; Thomas M. Keane; Thomas J. Naughton (ISPDC/HeteroPar, 2004)

A High-Throughput Bioinformatics Distributed Computing Platform. - Thomas M. Keane; Andrew J. Page; James O. McInerney; Thomas J. Naughton (CBMS, 2005)

Bioinformatics on a Heterogeneous Java Distributed System. - Andrew J. Page; Thomas M. Keane; Thomas J. Naughton (IPDPS, 2005)

DSEARCH: sensitive database searching using distributed computing. - Thomas M. Keane; Thomas J. Naughton (Bioinform., 2005)

DPRml: distributed phylogeny reconstruction by maximum likelihood. - Thomas M. Keane; Thomas J. Naughton; Simon A. A. Travers; James O. McInerney; Grace P. McCormack (Bioinform., 2005)

Distributed Monte Carlo simulation of light transportation in tissue. - Andrew J. Page; Shirley Coyle; Thomas M. Keane; Thomas J. Naughton; Charles Markham; Tomás E. Ward (IPDPS, 2006)

Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines. - Thomas M. Keane; Andrew J. Page; Thomas J. Naughton; Simon A. A. Travers; James O. McInerney (Algorithmica, 2006)

MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. - Thomas M. Keane; Thomas J. Naughton; James O. McInerney (Nucleic Acids Res., 2007)

Scheduling in a dynamic heterogeneous distributed system using estimation error. - Andrew J. Page; Thomas M. Keane; Thomas J. Naughton (J. Parallel Distributed Comput., 2008)

ABACAS: algorithm-based automatic contiguation of assembled sequences. - Samuel A. Assefa; Thomas M. Keane; Thomas D. Otto; Chris Newbold; Matthew Berriman (Bioinform., 2009)

Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system. - Andrew J. Page; Thomas M. Keane; Thomas J. Naughton (J. Parallel Distributed Comput., 2010)

RetroSeq: transposable element discovery from next-generation sequencing data. - Thomas M. Keane; Kim Wong; David J. Adams (Bioinform., 2013)

The European Nucleotide Archive in 2017. - Nicole Silvester; Blaise T. F. Alako; Clara Amid; Ana Cerdeño-Tárraga; Laura Clarke; Iain Cleland; Peter W. Harrison; Suran Jayathilaka; Simon Kay; Thomas M. Keane; Rasko Leinonen; Xin Liu 006; et al. (Nucleic Acids Res., 2018)

htsget: a protocol for securely streaming genomic data. - Jerome Kelleher; Mike Lin; Carl H. Albach; Ewan Birney; Robert Davies; Marina Gourtovaia; David Glazer; Cristina Y. González; David K. Jackson; Aaron Kemp; John Marshall; Andrew Nowak; et al. (Bioinform., 2019)

The European Nucleotide Archive in 2018. - Peter W. Harrison; Blaise T. F. Alako; Clara Amid; Ana Cerdeño-Tárraga; Iain Cleland; Sam Holt; Abdulrahman Hussein; Suran Jayathilaka; Simon Kay; Thomas M. Keane; Rasko Leinonen; Xin Liu 006; et al. (Nucleic Acids Res., 2019)

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. - Rachel Drysdale; Charles E. Cook; Robert Petryszak; Vivienne Baillie Gerritsen; Mary Barlow; Elisabeth Gasteiger; Franziska Gruhl; Jürgen Haas; Jerry Lanfear; Rodrigo Lopez; Nicole Redaschi; Heinz Stockinger; et al. (Bioinform., 2020)

The European Nucleotide Archive in 2019. - Clara Amid; Blaise T. F. Alako; Vishnukumar Balavenkataraman Kadhirvelu; Tony Burdett; Josephine Burgin; Jun Fan; Peter W. Harrison; Sam Holt; Abdulrahman Hussein; Eugene Ivanov; Suran Jayathilaka; Simon Kay; et al. (Nucleic Acids Res., 2020)

Crypt4GH: a file format standard enabling native access to encrypted data. - Alexander Senf; Robert Davies; Frédéric Haziza; John Marshall; Juan Ramón Troncoso-Pastoriza; Oliver Hofmann 001; Thomas M. Keane (Bioinform., 2021)

Refget: standardized access to reference sequences. - Andrew D. Yates; Jeremy Adams; Somesh Chaturvedi; Robert Davies; Matthew R. Laird; Rasko Leinonen; Rishi Nag; Nathan C. Sheffield; Oliver Hofmann 001; Thomas M. Keane (Bioinform., 2021)

The European Variation Archive: a FAIR resource of genomic variation for all species. - Timothee Cezard; Fiona Cunningham; Sarah E. Hunt; Baron Koylass; Nitin Kumar 004; Gary Saunders; April Shen; Andres f Silva; Kirill Tsukanov; Sundararaman Venkataraman; Paul Flicek; Helen E. Parkinson; et al. (Nucleic Acids Res., 2022)

The European Genome-phenome Archive in 2021. - Mallory Ann Freeberg; Lauren A. Fromont; Teresa D'altri; Anna Foix Romero; Jorge Izquierdo Ciges; Aina Jene; Giselle Kerry; Mauricio Moldes; Roberto Ariosa; Silvia Bahena; Daniel Barrowdale; Marcos Casado Barbero; et al. (Nucleic Acids Res., 2022)

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022. - Matthew Thakur; Alex Bateman; Cath Brooksbank; Mallory Ann Freeberg; Melissa Harrison; Matthew Hartley; Thomas M. Keane; Gerard J. Kleywegt; Andrew Leach; Maria Levchenko; Sarah L. Morgan; Ellen M. McDonagh; et al. (Nucleic Acids Res., 2023)