Deducing topology of protein-protein interaction networks from experimentally measured sub-networks. - Ling Yang; Thomas M. Vondriska; Zhangang Han; W. Robb MacLellan; James N. Weiss; Zhilin Qu (BMC Bioinform., 2008)

genomeSidekick: A user-friendly epigenomics data analysis tool. - Junjie Chen; Ashley J. Zhu; René R. Sevag Packard; Thomas M. Vondriska; Douglas J. Chapski (Frontiers Bioinform., 2022)