Deep Learning Improves Template Matching by Normalized Cross Correlation. - Davit Buniatyan; Thomas Macrina; Dodam Ih; Jonathan Zung; H. Sebastian Seung (CoRR, 2017)

Weakly Supervised Deep Metric Learning for Template Matching. - Davit Buniatyan; Sergiy Popovych; Dodam Ih; Thomas Macrina; Jonathan Zung; H. Sebastian Seung (CVC (1), 2019)

Convolutional nets for reconstructing neural circuits from brain images acquired by serial section electron microscopy. - Kisuk Lee; Nicholas L. Turner; Thomas Macrina; Jingpeng Wu; Ran Lu; H. Sebastian Seung (CoRR, 2019)

Automated Neuron Shape Analysis from Electron Microscopy. - Sharmishtaa Seshamani; Leila Elabbady; Casey Schneider-Mizell; Gayathri Mahalingam; Sven Dorkenwald; Agnes Bodor; Thomas Macrina; Daniel Bumbarger; JoAnn Buchanan; Marc Takeno; Wenjing Yin; Derrick Brittain; et al. (CoRR, 2020)

Precise Alignment of Serial Section Electron Microscopy Images and Analysis of Neural Circuits - Thomas Macrina (2022)