BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. - Christoph Bock; Sabine Reither; Thomas Mikeska; Martina Paulsen; Jörn Walter; Thomas Lengauer (Bioinform., 2005)

MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing. - Nicholas C. Wong; Bernard J. Pope; Ida L. Candiloro; Darren Korbie; Matt Trau; Stephen Q. Wong; Thomas Mikeska; Xinmin Zhang; Mark Pitman; Stefanie Eggers; Stephen R. Doyle; Alexander Dobrovic (BMC Bioinform., 2016)