Functional reorganization in rat somatosensory cortex assessed by fMRI: Elastic image registration based on structural landmarks in fMRI images and application to spinal cord injured rats. - Esther Sydekum; Christof Baltes; Arko Ghosh; Thomas Mueggler; Martin E. Schwab; Markus Rudin (NeuroImage, 2009)

MRI signature in a novel mouse model of genetically induced adult oligodendrocyte cell death. - Thomas Mueggler; Hartmut Pohl; Christof Baltes; Dieter Riethmacher; Ueli Suter; Markus Rudin (NeuroImage, 2012)

Functional MRI to assess alterations of functional networks in response to pharmacological or genetic manipulations of the serotonergic system in mice. - Florence Razoux; Christof Baltes; Thomas Mueggler; Aline Seuwen; Holger Russig; Isabelle Mansuy; Markus Rudin (NeuroImage, 2013)

"Domain gauges": A reference system for multivariate profiling of brain fMRI activation patterns induced by psychoactive drugs in rats. - Andreas Bruns; Thomas Mueggler; Basil Künnecke; Céline Risterucci; Eric P. Prinssen; Joseph G. Wettstein; Markus von Kienlin (NeuroImage, 2015)