Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks. - Claus Lundegaard; Thomas Nordahl Petersen; Morten Nielsen 001; Henrik Bohr; Jakob Bohr; Søren Brunak; Garry Gippert; Ole Lund (Mathematical Methods for Protein Structure Analysis and Design, 2003)

CPHmodels-3.0 - remote homology modeling using structure-guided sequence profiles. - Morten Nielsen 001; Claus Lundegaard; Ole Lund; Thomas Nordahl Petersen (Nucleic Acids Res., 2010)

Compass: A hybrid method for clinical and biobank data mining. - Konrad Krysiak-Baltyn; Thomas Nordahl Petersen; Karine Audouze; Niels Jørgensen; Lars Ängquist; Søren Brunak (J. Biomed. Informatics, 2014)

Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data. - Kosai Al-Nakeeb; Thomas Nordahl Petersen; Thomas Sicheritz-Pontén (BMC Bioinform., 2017)

ARGprofiler - a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets. - Hannah-Marie Martiny; Nikiforos Pyrounakis; Thomas Nordahl Petersen; Oksana Lukjancenko; Frank Aarestrup; Philip T. L. C. Clausen; Patrick Munk (Bioinform., 2024)