A multitype infinite-allele branching process with applications to cancer evolution. - Thomas O. McDonald; Marek Kimmel (J. Appl. Probab., 2015)

SIApopr: a computational method to simulate evolutionary branching trees for analysis of tumor clonal evolution. - Thomas O. McDonald; Franziska Michor (Bioinform., 2017)

Multitype infinite-allele branching processes in continuous time. - Thomas O. McDonald; Marek Kimmel (J. Appl. Probab., 2017)

DIFFpop: a stochastic computational approach to simulate differentiation hierarchies with single cell barcoding. - Jeremy Ferlic; Jiantao Shi; Thomas O. McDonald; Franziska Michor (Bioinform., 2019)

ESTIpop: a computational tool to simulate and estimate parameters for continuous-time Markov branching processes. - James P. Roney; Jeremy Ferlic; Franziska Michor; Thomas O. McDonald (Bioinform., 2020)