Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations. - Salim Akhter Chowdhury; Stanley Shackney; Kerstin Heselmeyer-Haddad; Thomas Ried; Alejandro A. Schäffer; Russell Schwartz (Bioinform., 2013)

Algorithms to Model Single Gene, Single Chromosome, and Whole Genome Copy Number Changes Jointly in Tumor Phylogenetics. - Salim Akhter Chowdhury; Stanley E. Shackney; Kerstin Heselmeyer-Haddad; Thomas Ried; Alejandro A. Schäffer; Russell Schwartz (PLoS Comput. Biol., 2014)

Inferring models of multiscale copy number evolution for single-tumor phylogenetics. - Salim Akhter Chowdhury; E. Michael Gertz; Darawalee Wangsa; Kerstin Heselmeyer-Haddad; Thomas Ried; Alejandro A. Schäffer; Russell Schwartz (Bioinform., 2015)

Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data. - Haoyun Lei; E. Michael Gertz; Alejandro A. Schäffer; Xuecong Fu; Yifeng Tao; Kerstin Heselmeyer-Haddad; Irianna Torres; Guibo Li; Liqin Xu; Yong Hou; Kui Wu 005; Xulian Shi; et al. (Bioinform., 2021)

Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers. - Xuecong Fu; Haoyun Lei; Yifeng Tao; Kerstin Heselmeyer-Haddad; Irianna Torres; Michael Dean; Thomas Ried; Russell Schwartz (J. Comput. Biol., 2021)