Efficient sampling for Bayesian inference of conjunctive Bayesian networks. - Thomas Sakoparnig; Niko Beerenwinkel (Bioinform., 2012)

Binding Profiles of Chromatin-Modifying Proteins Are Predictive for Transcriptional Activity and Promoter-Proximal Pausing. - Thomas Sakoparnig; Tobias Kockmann; Renato Paro; Christian Beisel; Niko Beerenwinkel (J. Comput. Biol., 2012)

Identification of Constrained Cancer Driver Genes Based on Mutation Timing. - Thomas Sakoparnig; Patrick Fried; Niko Beerenwinkel (PLoS Comput. Biol., 2015)

Identifying cell states in single-cell RNA-seq data at statistically maximal resolution. - Pascal Grobecker; Thomas Sakoparnig; Erik van Nimwegen (PLoS Comput. Biol., 2024)