Towards Whole Cell "in Silico" Models for Cellular Systems: Model Set-up and Model Validation. - Andreas Kremling; Katja Bettenbrock; Sophia Fischer; Martin Ginkel; Thomas Sauter; Ernst Dieter Gilles (POSTA, 2003)

An Approach for Dividing Models of Biological Reaction Networks into Functional Units. - Michael Ederer; Thomas Sauter; Eric Bullinger; Ernst Dieter Gilles; Frank Allgöwer (Simul., 2003)

Praxisbericht: Horizontale und vertikale Integration am Beispiel des Aufragsmanagemenst bei der MCG der DaimlerChrysler AG. - Rainer Schrapel; Thomas Sauter (GI Jahrestagung (2), 2004)

A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. - Holger Conzelmann; Julio Saez-Rodriguez; Thomas Sauter; Boris N. Kholodenko; Ernst Dieter Gilles (BMC Bioinform., 2006)

Analyse der evolutiven Adaptation am Beispiel einer pyruvat-auxotrophen Escherichia coli-Mutante (Analysis of the Evolutive Adaptation of a Pyruvate-auxotrophic Escherichia coli Mutant). - Ronny Feuer; Michael Ederer; Ernst Dieter Gilles; Georg A. Sprenger; Oliver Sawodny; Thomas Sauter (Autom., 2008)

Mechanism of PP2A-mediated IKKβ dephosphorylation: a systems biological approach. - Johannes Witt; Sandra Barisic; Eva Schumann; Frank Allgöwer; Oliver Sawodny; Thomas Sauter; Dagmar Kulms (BMC Syst. Biol., 2009)

ON/OFF and Beyond - A Boolean Model of Apoptosis. - Rebekka Schlatter; Kathrin Schmich; Ima Avalos Vizcarra; Peter Scheurich; Thomas Sauter; Christoph Borner; Michael Ederer; Irmgard Merfort; Oliver Sawodny (PLoS Comput. Biol., 2009)

A Study of the PDGF Signaling Pathway with PRISM - Qixia Yuan; Jun Pang 001; Sjouke Mauw; Panuwat Trairatphisan; Monique Wiesinger; Thomas Sauter (CompMod, 2011)

A systems biology approach to analyse leaf carbohydrate metabolism in Arabidopsis thaliana. - Sebastian Henkel; Thomas Nägele; Imke Hörmiller; Thomas Sauter; Oliver Sawodny; Michael Ederer; Arnd G. Heyer (EURASIP J. Bioinform. Syst. Biol., 2011)

Modeling time delay in the NFκB signaling pathway following low dose IL-1 stimulation. - Johannes Witt; Sandra Barisic; Oliver Sawodny; Michael Ederer; Dagmar Kulms; Thomas Sauter (EURASIP J. Bioinform. Syst. Biol., 2011)

Probabilistic Model Checking of the PDGF Signaling Pathway. - Qixia Yuan; Panuwat Trairatphisan; Jun Pang 001; Sjouke Mauw; Monique Wiesinger; Thomas Sauter (Trans. Comp. Sys. Biology, 2012)

Identification of New IκBα Complexes by an Iterative Experimental and Mathematical Modeling Approach. - Fabian Konrath; Johannes Witt; Thomas Sauter; Dagmar Kulms (PLoS Comput. Biol., 2014)

Fast Reconstruction of Compact Context-Specific Metabolic Network Models. - Nikos Vlassis; Maria Pires Pacheco; Thomas Sauter (PLoS Comput. Biol., 2014)

Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond. - Thomas Pfau; Maria Pires Pacheco; Thomas Sauter (Briefings Bioinform., 2016)

FALCON: a toolbox for the fast contextualization of logical networks. - Sébastien De Landtsheer; Panuwat Trairatphisan; Philippe Lucarelli; Thomas Sauter (Bioinform., 2017)

An Efficient Machine Learning Method to Solve Imbalanced Data in Metabolic Disease Prediction. - Vânia Cecchini; Thanh-Phuong Nguyen 002; Thomas Pfau; Sébastien De Landtsheer; Thomas Sauter (KSE, 2019)

Towards the Integration of Metabolic Network Modelling and Machine Learning for the Routine Analysis of High-Throughput Patient Data. - Maria Pires Pacheco; Tamara Bintener; Thomas Sauter (Automated Reasoning for Systems Biology and Medicine, 2019)

Topological network measures for drug repositioning. - Apurva Badkas; Sébastien De Landtsheer; Thomas Sauter (Briefings Bioinform., 2021)

Project-based learning course on metabolic network modelling in computational systems biology. - Thomas Sauter; Tamara Bintener; Ali Kishk; Luana Presta; Tessy Prohaska; Daniel Guignard; Ni Zeng; Claudia Cipriani; Sundas Arshad; Thomas Pfau; Patricia Martins Conde; Maria Pires Pacheco (PLoS Comput. Biol., 2022)

Metabolic models predict fotemustine and the combination of eflornithine/rifamycin and adapalene/cannabidiol for the treatment of gliomas. - Ali Kishk; Maria Pires Pacheco; Tony Heurtaux; Thomas Sauter (Briefings Bioinform., 2024)

Model ensembling as a tool to form interpretable multi-omic predictors of cancer pharmacosensitivity. - Sébastien De Landtsheer; Apurva Badkas; Dagmar Kulms; Thomas Sauter (Briefings Bioinform., 2024)