Automatic assessment of developmental dysplasia of the hip. - Niamul Quader; Antony J. Hodgson; Kishore Mulpuri; Thomas Savage; Rafeef Abugharbieh (ISBI, 2015)

Methods to Estimate Large Language Model Confidence. - Maia Kotelanski; Robert Gallo; Ashwin Nayak 002; Thomas Savage (CoRR, 2023)

MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records. - Scott L. Fleming; Alejandro Lozano; William J. Haberkorn; Jenelle A. Jindal; Eduardo Pontes Reis; Rahul Thapa; Louis Blankemeier; Julian Z. Genkins; Ethan Steinberg; Ashwin Nayak 002; Birju S. Patel; Chia-Chun Chiang; et al. (AAAI, 2024)

Vision-Language and Large Language Model Performance in Gastroenterology: GPT, Claude, Llama, Phi, Mistral, Gemma, and Quantized Models. - Seyed Amir Ahmad Safavi-Naini; Shuhaib Ali; Omer Shahab; Zahra Shahhoseini; Thomas Savage; Sara Rafiee; Jamil S. Samaan; Reem Al Shabeeb; Farah Ladak; Jamie O. Yang; Juan Echavarria; Sumbal Babar; et al. (CoRR, 2024)

Large Language Models versus Classical Machine Learning: Performance in COVID-19 Mortality Prediction Using High-Dimensional Tabular Data. - Mohammadreza Ghaffarzadeh-Esfahani; Mahdi Ghaffarzadeh-Esfahani; Arian Salahi-Niri; Hossein Toreyhi; Zahra Atf; Amirali Mohsenzadeh-Kermani; Mahshad Sarikhani; Zohreh Tajabadi; Fatemeh Shojaeian; Mohammad Hassan Bagheri; Aydin Feyzi; Mohammadamin Tarighatpayma; et al. (CoRR, 2024)

Fine Tuning Large Language Models for Medicine: The Role and Importance of Direct Preference Optimization. - Thomas Savage; Stephen Ma; Abdessalem Boukil; Vishwesh Patel; Ekanath Rangan; Ivan Rodriguez; Jonathan H. Chen (CoRR, 2024)

Diagnostic reasoning prompts reveal the potential for large language model interpretability in medicine. - Thomas Savage; Ashwin Nayak 002; Robert Gallo; Ekanath Rangan; Jonathan H. Chen (npj Digit. Medicine, 2024)

Establishing best practices in large language model research: an application to repeat prompting. - Robert Gallo; Michael T. M. Baiocchi; Thomas Savage; Jonathan H. Chen (J. Am. Medical Informatics Assoc., 2025)

Large language model uncertainty proxies: discrimination and calibration for medical diagnosis and treatment. - Thomas Savage; John Wang; Robert Gallo; Abdessalem Boukil; Vishwesh Patel; Seyed Amir Ahmad Safavi-Naini; Ali Soroush; Jonathan H. Chen (J. Am. Medical Informatics Assoc., 2025)

Self-Reported Confidence of Large Language Models in Gastroenterology: Analysis of Commercial, Open-Source, and Quantized Models. - Nariman Naderi; Seyed Amir Ahmad Safavi-Naini; Thomas Savage; Zahra Atf; Peter Lewis; Girish N. Nadkarni; Ali Soroush (CoRR, 2025)

The challenge of uncertainty quantification of large language models in medicine. - Zahra Atf; Seyed Amir Ahmad Safavi-Naini; Peter Lewis; Aref Mahjoubfar; Nariman Naderi; Thomas Savage; Ali Soroush (CoRR, 2025)

Conversation Forests: The Key to Fine Tuning Large Language Models for Multi-Turn Medical Conversations is Branching. - Thomas Savage (CoRR, 2025)