New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence. - Mengfei Cao; Christopher M. Pietras; Xian Feng; Kathryn J. Doroschak; Thomas Schaffner; Jisoo Park; Hao Zhang; Lenore J. Cowen; Benjamin J. Hescott (Bioinform., 2014)

A Multi-species Functional Embedding Integrating Sequence and Network Structure. - Mark D. M. Leiserson; Jason Fan; Anthony Cannistra; Inbar Fried; Tim Lim; Thomas Schaffner; Mark Crovella; Benjamin J. Hescott (RECOMB, 2018)