Building and analysing genome-wide gene disruption networks. - Johan Rung; Thomas Schlitt; Alvis Brazma; K. Freivalds; Jaak Vilo (ECCB, 2002)

Current approaches to gene regulatory network modelling. - Thomas Schlitt; Alvis Brazma (BMC Bioinform., 2007)

Tailored graph ensembles as proxies or null models for real networks II: results on directed graphs - E. S. Roberts; Anthony C. C. Coolen; Thomas Schlitt (CoRR, 2011)

BioGranat-IG: a network analysis tool to suggest mechanisms of genetic heterogeneity from exome-sequencing data. - Nick Dand; Frauke Sprengel; Volker Ahlers; Thomas Schlitt (Bioinform., 2013)

Modeling and Analysis of Qualitative Behavior of Gene Regulatory Networks. - Alvis Brazma; Karlis Cerans; Dace Ruklisa; Thomas Schlitt; Juris Viksna (HSB, 2014)

Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters - the case of phage λ. - Dace Ruklisa; Alvis Brazma; Karlis Cerans; Thomas Schlitt; Juris Viksna (BMC Bioinform., 2019)