Quadratic Time Algorithms for Finding Common Intervals in Two and More Sequences. - Thomas Schmidt 001; Jens Stoye (CPM, 2004)

Efficient algorithms for gene cluster detection in prokaryotic genomes - Thomas Schmidt 001 (2005)

Character sets of strings. - Gilles Didier; Thomas Schmidt 001; Jens Stoye; Dekel Tsur (J. Discrete Algorithms, 2007)

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) Open. - Juliane C. Dohm; André E. Minoche; Daniela Holtgräwe; Salvador Capella-Gutiérrez; Falk Zakrzewski; Hakim Tafer; Oliver Rupp; Thomas Rosleff Sörensen; Ralf Stracke; Richard Reinhardt; Alexander Goesmann; Thomas Kraft; et al. (Nat., 2014)