Durchgängig rechnerunterstützte technologische Fertigungsvorbereitung unter besonderer Berücksichtigung der Arbeitsgangfolgeermittlung. - Andreas Görnitz; Wolfram Märkl; Thomas Seidel (1985)

Structure and reaction based evaluation of synthetic accessibility. - Krisztina Boda; Thomas Seidel; Johann Gasteiger (J. Comput. Aided Mol. Des., 2007)

An Agent-Based Approach to Self-organized Production. - Thomas Seidel; Jeanette Hartwig; Richard L. Sanders; Dirk Helbing (Swarm Intelligence, 2008)

Second-generation de novo design: a view from a medicinal chemist perspective. - Andrea Zaliani; Krisztina Boda; Thomas Seidel; Achim Herwig; Christof H. Schwab; Johann Gasteiger; Holger Claussen 002; Christian Lemmen; Jörg Degen; Juri Pärn; Matthias Rarey (J. Comput. Aided Mol. Des., 2009)

Potentials and limitations of RFID applications in packaging industry: a case study. - Thomas Seidel; Reik V. Donner (Int. J. Manuf. Technol. Manag., 2010)

Ligand-side tautomer enumeration and scoring for structure-based drug-design. - Thomas Seidel; Gerhard Wolber (J. Cheminformatics, 2010)

3D pharmacophore alignments: does improved geometric accuracy affect virtual screening performance? - Gerhard Wolber; Thomas Seidel; Fabian Bendix (J. Cheminformatics, 2010)

Selbst erstellte Lehrfilme im Mathematikunterricht - Schülerinnen und Schüler erstellen Lehrfilme. - Thomas Seidel (LOG IN, 2010)

A Semi-automatic Approach for Segmentation of Three-Dimensional Microscopic Image Stacks of Cardiac Tissue. - Thomas Seidel; Thomas Draebing; Gunnar Seemann; Frank B. Sachse (FIMH, 2013)

Common Hits Approach: Combining Pharmacophore Modeling and Molecular Dynamics Simulations. - Marcus Wieder; Arthur Garon; Ugo Perricone; Stefan Boresch; Thomas Seidel; Anna Maria Almerico; Thierry Langer (J. Chem. Inf. Model., 2017)

LigandScout Remote: A New User-Friendly Interface for HPC and Cloud Resources. - Thomas Kainrad; Sascha Hunold; Thomas Seidel; Thierry Langer (J. Chem. Inf. Model., 2019)

QPHAR: quantitative pharmacophore activity relationship: method and validation. - Stefan M. Kohlbacher; Thierry Langer; Thomas Seidel (J. Cheminformatics, 2021)

Confocal microscopy-based estimation of intracellular conductivities in myocardium for modeling of the normal and infarcted heart. - Joachim Greiner; Aparna C. Sankarankutty; Thomas Seidel; Frank B. Sachse (Comput. Biol. Medicine, 2022)

Apo2ph4: A Versatile Workflow for the Generation of Receptor-based Pharmacophore Models for Virtual Screening. - Jörg Heider; Jonas Kilian; Aleksandra Garifulina; Steffen Hering; Thierry Langer; Thomas Seidel (J. Chem. Inf. Model., 2023)

High-Quality Conformer Generation with CONFORGE: Algorithm and Performance Assessment. - Thomas Seidel; Christian Permann; Oliver Wieder; Stefan M. Kohlbacher; Thierry Langer (J. Chem. Inf. Model., 2023)

PharmacoMatch: Efficient 3D Pharmacophore Screening through Neural Subgraph Matching. - Daniel Rose; Oliver Wieder; Thomas Seidel; Thierry Langer (CoRR, 2024)

Active Learning Approach for Guiding Site-of-Metabolism Measurement and Annotation. - Ya Chen 002; Thomas Seidel; Roxane Axel Jacob; Steffen Hirte; Angelica Mazzolari; Alessandro Pedretti; Giulio Vistoli; Thierry Langer; Filip Miljkovic; Johannes Kirchmair (J. Chem. Inf. Model., 2024)

PharmacoMatch: Efficient 3D Pharmacophore Screening via Neural Subgraph Matching. - Daniel Rose; Oliver Wieder; Thomas Seidel; Thierry Langer (ICLR, 2025)

GRADE and X-GRADE: Unveiling Novel Protein-Ligand Interaction Fingerprints Based on GRAIL Scores. - Christian Fellinger; Thomas Seidel; Benjamin Merget; Klaus-Jürgen Schleifer; Thierry Langer (J. Chem. Inf. Model., 2025)