Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction. - Sarah von Löhneysen; Thomas Spicher; Yuliia Varenyk; Hua-Ting Yao; Ronny Lorenz; Ivo L. Hofacker; Peter F. Stadler (ISBRA, 2023)

Local RNA folding revisited. - Maria Waldl; Thomas Spicher; Ronny Lorenz; Irene K. Beckmann; Ivo L. Hofacker; Sarah von Löhneysen; Peter F. Stadler (J. Bioinform. Comput. Biol., 2023)

Modified RNAs and predictions with the ViennaRNA Package. - Yuliia Varenyk; Thomas Spicher; Ivo L. Hofacker; Ronny Lorenz (Bioinform., 2023)

Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction. - Sarah von Löhneysen; Thomas Spicher; Yuliia Varenyk; Hua-Ting Yao; Ronny Lorenz; Ivo L. Hofacker; Peter F. Stadler (J. Comput. Biol., 2024)

Integrating High-Throughput RNA-RNA Interaction Data Into RNA Secondary Structure Prediction. - Denis Skibinski; Thomas Spicher; Leonhard Sidl; Paulína Holotová; Yingjie Pan; Maximilian Faissner; Cristian A. Velandia-Huerto; Ronny Lorenz; Maria Waldl; Hua-Ting Yao; Peter F. Stadler (ISBRA (2), 2025)