Density functional study of guanine quartet structures. - Michael Meyer 003; Thomas Steinke 001; Jürgen Sühnel; Maria Brandl (German Conference on Bioinformatics, 1999)

Density functional study of guanine and uracil quartets and of guanine quartet/metal ion complexes. - Michael Meyer 003; Thomas Steinke 001; Maria Brandl; Jürgen Sühnel (J. Comput. Chem., 2001)

Columba: Multidimensional Data Integration of Protein Annotations. - Kristian Rother; Heiko Müller 001; Silke Trißl; Ina Koch; Thomas Steinke 001; Robert Preissner; Cornelius Frömmel; Ulf Leser (DILS, 2004)

Columba: an integrated database of proteins, structures, and annotations. - Silke Trißl; Kristian Rother; Heiko Müller 001; Thomas Steinke 001; Ina Koch; Robert Preissner; Cornelius Frömmel; Ulf Leser (BMC Bioinform., 2005)

ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services. - Patrick May; Hans-Christian Ehrlich; Thomas Steinke 001 (Euro-Par, 2006)

Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs. - Patrick May; Gunnar W. Klau; Markus Bauer 001; Thomas Steinke 001 (GCCB, 2006)

Connectivity independent protein-structure alignment: a hierarchical approach. - Björn Kolbeck; Patrick May; Tobias Schmidt-Goenner; Thomas Steinke 001; Ernst-Walter Knapp (BMC Bioinform., 2006)

Visualization in Health Grid Environments: A Novel Service and Business Approach. - Frank Dickmann; Mathias Kaspar; Benjamin Löhnhardt; Nick Kepper; Fred Viezens; Frank Hertel; Michael Lesnussa; Yassene Mohammed; Andreas Thiel; Thomas Steinke 001; Johannes Bernarding; Dagmar Krefting; et al. (GECON, 2009)

Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors. - Raphael André Bauer; Kristian Rother; Peter Moor; Knut Reinert; Thomas Steinke 001; Janusz M. Bujnicki; Robert Preissner (Algorithms, 2009)

MediGRID: Towards a user friendly secured grid infrastructure. - Dagmar Krefting; Julian Bart; Kamen Beronov; Olga Dzhimova; Jürgen Falkner; Michael Hartung; Andreas Hoheisel; Tobias A. Knoch; Thomas Lingner; Yassene Mohammed; Kathrin Peter; Erhard Rahm; et al. (Future Gener. Comput. Syst., 2009)

Programming Challenges for the Implementation of Numerical Quadrature in Atomic Physics on FPGA and GPU Accelerators. - Charles J. Gillan; Thomas Steinke 001; J. Bock; S. Borchert; Ivor T. A. Spence; N. Stanley Scott (CCGRID, 2010)

PTGL: a database for secondary structure-based protein topologies. - Patrick May; Annika Kreuchwig; Thomas Steinke 001; Ina Koch (Nucleic Acids Res., 2010)

Granular Security for a Science Gateway in Structural Bioinformatics. - Sandra Gesing; Richard Grunzke; Ákos Balaskó; Georg Birkenheuer; Dirk Blunk; Sebastian Breuers; André Brinkmann; Gregor Fels; Sonja Herres-Pawlis; Péter Kacsuk; Miklos Kozlovszky; Jens Krüger 002; et al. (IWSG-Life, 2011)

Molecular simulation grid. - Jens Krüger 002; Georg Birkenheuer; Dirk Blunk; Sebastian Breuers; André Brinkmann; Gregor Fels; Sandra Gesing; Richard Grunzke; Oliver Kohlbacher; Nico Kruber; Ulrich Lang 002; Lars Packschies; et al. (J. Cheminformatics, 2011)

MoSGrid - a molecular simulation grid as a new tool in computational chemistry, biology and material science. - Georg Birkenheuer; Dirk Blunk; Sebastian Breuers; André Brinkmann; Ines dos Santos Vieira; Gregor Fels; Sandra Gesing; Richard Grunzke; Sonja Herres-Pawlis; Oliver Kohlbacher; Nico Kruber; Jens Krüger 002; et al. (J. Cheminformatics, 2011)

Comparing the implementation of two-dimensional numerical quadrature on GPU, FPGA and ClearSpeed systems to study electron scattering by atoms. - Charles J. Gillan; Thomas Steinke 001; J. Bock; S. Borchert; Ivor T. A. Spence; N. Stanley Scott (Concurr. Comput. Pract. Exp., 2012)

A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics. - Sandra Gesing; Richard Grunzke; Jens Krüger 002; Georg Birkenheuer; Martin Wewior; Patrick Schäfer 001; Bernd Schuller; Johannes Schuster; Sonja Herres-Pawlis; Sebastian Breuers; Ákos Balaskó; Miklos Kozlovszky; et al. (J. Grid Comput., 2012)

High-Performance Reconfigurable Computing. - Khaled Benkrid; Esam El-Araby; Miaoqing Huang; Kentaro Sano; Thomas Steinke 001 (Int. J. Reconfigurable Comput., 2012)

MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment. - Georg Birkenheuer; Dirk Blunk; Sebastian Breuers; André Brinkmann; Ines dos Santos Vieira; Gregor Fels; Sandra Gesing; Richard Grunzke; Sonja Herres-Pawlis; Oliver Kohlbacher; Jens Krüger 002; Ulrich Lang 002; et al. (J. Cheminformatics, 2012)

Solutions for biomedical grid computing - Case studies from the D-Grid project Services@MediGRID. - Frank Dickmann; Jürgen Falkner; Wilfried Gunia; Jochen Hampe; Michael Hausmann; Alexander Herrmann; Nick Kepper; Tobias A. Knoch; Svenja Lauterbach; Jörg Lippert; Kathrin Peter; Eberhard Schmitt; et al. (J. Comput. Sci., 2012)

An Automated Approach for Estimating the Memory Footprint of Non-linear Data Objects. - Sebastian Dreßler; Thomas Steinke 001 (Euro-Par Workshops, 2013)

Swendsen-Wang multi-cluster algorithm for the 2D/3D Ising model on Xeon Phi and GPU. - Florian Wende; Thomas Steinke 001 (SC, 2013)

The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment. - Lars Packschies; Georg Birkenheuer; Dirk Blunk; Sebastian Breuers; André Brinkmann; Ines dos Santos Vieira; Gregor Fels; Sandra Gesing; Richard Grunzke; Sonja Herres-Pawlis; Oliver Kohlbacher; Jens Krüger 002; et al. (J. Cheminformatics, 2013)

Special issue of the Journal of Parallel and Distributed Computing (JDPC) on novel architectures for high-performance computing. - Simon McIntosh-Smith; Charles Gillan; Nico Sanna; Stan Scott; Thomas Steinke 001 (J. Parallel Distributed Comput., 2013)

Concurrent Kernel Execution on Xeon Phi within Parallel Heterogeneous Workloads. - Florian Wende; Thomas Steinke 001; Frank Cordes (Euro-Par, 2014)

A Unified Programming Model for Intra- and Inter-Node Offloading on Xeon Phi Clusters. - Matthias Noack; Florian Wende; Thomas Steinke 001; Frank Cordes (SC, 2014)

Standards-based metadata management for molecular simulations. - Richard Grunzke; Sebastian Breuers; Sandra Gesing; Sonja Herres-Pawlis; Martin Kruse; Dirk Blunk; Luis de la Garza; Lars Packschies; Patrick Schäfer 001; Charlotta Schärfe; Tobias Schlemmer; Thomas Steinke 001; et al. (Concurr. Comput. Pract. Exp., 2014)

Energy consumption of CUDA kernels with varying thread topology. - Sebastian Dreßler; Thomas Steinke 001 (Comput. Sci. Res. Dev., 2014)

An automated approach for estimating the memory footprint of nonlinear data objects. - Sebastian Dreßler; Thomas Steinke 001 (Concurr. Comput. Pract. Exp., 2015)

Portable SIMD Performance with OpenMP* 4.x Compiler Directives. - Florian Wende; Matthias Noack; Thomas Steinke 001; Michael Klemm; Chris J. Newburn; Georg Zitzlsberger (Euro-Par, 2016)

Fast In-Memory Checkpointing with POSIX API for Legacy Exascale-Applications. - Jan Fajerski; Matthias Noack; Alexander Reinefeld; Florian Schintke; Thorsten Schütt; Thomas Steinke 001 (Software for Exascale Computing, 2016)

FFMK: A Fast and Fault-Tolerant Microkernel-Based System for Exascale Computing. - Carsten Weinhold; Adam Lackorzynski; Jan Bierbaum; Martin Küttler; Maksym Planeta; Hermann Härtig; Amnon Shiloh; Ely Levy; Tal Ben-Nun; Amnon Barak; Thomas Steinke 001; Thorsten Schütt; et al. (Software for Exascale Computing, 2016)

KART - A Runtime Compilation Library for Improving HPC Application Performance. - Matthias Noack; Florian Wende; Georg Zitzlsberger; Michael Klemm; Thomas Steinke 001 (ISC Workshops, 2017)

DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion. - Matthias Noack; Alexander Reinefeld; Tobias Kramer; Thomas Steinke 001 (IPDPS Workshops, 2018)

Porting the MPI-parallelised LES model PALM to multi-GPU systems and many integrated core processors - an experience report. - Helge Knoop; Tobias Gronemeier; Matthias Sühring; Peter Steinbach; Matthias Noack; Florian Wende; Thomas Steinke 001; Christoph Knigge; Siegfried Raasch; Klaus Ketelsen (Int. J. Comput. Sci. Eng., 2018)

OpenMP to FPGA Offloading Prototype Using OpenCL SDK. - Marius Knaust; Florian Mayer 001; Thomas Steinke 001 (IPDPS Workshops, 2019)

Heterogeneous Active Messages for Offloading on the NEC SX-Aurora TSUBASA. - Matthias Noack; Erich Focht; Thomas Steinke 001 (IPDPS Workshops, 2019)

Using FPGAs to Accelerate HPC and Data Analytics on Intel-Based Systems. - Thomas Steinke 001; Estela Suarez; Taisuke Boku; Nalini Kumar; David E. Martin (ISC Workshops, 2019)

HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids. - Samer Alhaddad; Jens Förstner; Stefan Groth; Daniel Grünewald; Yevgen Grynko; Frank Hannig; Tobias Kenter; Franz-Josef Pfreundt; Christian Plessl; Merlind Schotte; Thomas Steinke 001; Jürgen Teich; et al. (Euro-Par Workshops, 2020)

Porting a Legacy CUDA Stencil Code to oneAPI. - Steffen Christgau; Thomas Steinke 001 (IPDPS Workshops, 2020)

Leveraging a Heterogeneous Memory System for a Legacy Fortran Code: The Interplay of Storage Class Memory, DRAM and OS. - Steffen Christgau; Thomas Steinke 001 (MCHPC@SC, 2020)

Performance Evaluation and Improvements of the PoCL Open-Source OpenCL Implementation on Intel CPUs. - Tobias Baumann; Matthias Noack; Thomas Steinke 001 (IWOCL, 2021)

Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA. - Marius Knaust; Enrico Seiler; Knut Reinert; Thomas Steinke 001 (FPGA, 2022)

A First Step towards Support for MPI Partitioned Communication on SYCL-programmed FPGAs. - Steffen Christgau; Marius Knaust; Thomas Steinke 001 (H2RC@SC, 2022)

The HighPerMeshes framework for numerical algorithms on unstructured grids. - Samer Alhaddad; Jens Förstner; Stefan Groth; Daniel Grünewald; Yevgen Grynko; Frank Hannig; Tobias Kenter; Franz-Josef Pfreundt; Christian Plessl; Merlind Schotte; Thomas Steinke 001; Jürgen Teich; et al. (Concurr. Comput. Pract. Exp., 2022)

Efficient adaptivity for simulating cardiac electrophysiology with spectral deferred correction methods. - Fatemeh Chegini; Thomas Steinke 001; Martin Weiser (CoRR, 2023)

Efficient and Near-Optimal Noise Generation for Streaming Differential Privacy. - Krishnamurthy Dj Dvijotham; H. Brendan McMahan; Krishna Pillutla; Thomas Steinke 001; Abhradeep Thakurta (FOCS, 2024)