Post-processing long pairwise alignments. - Zheng Zhang 004; Piotr Berman; Thomas Wiehe; Webb Miller (Bioinform., 1999)

Genome Sequence Comparisons: Hurdles in the Fast Lane to Functional Genomics. - Thomas Wiehe; Roderic Guigó; Webb Miller (Briefings Bioinform., 2000)

A Program for the Construction of a Promoter Model From a Set of Upstream Sequences of Coregulated Genes. - Ulrike Göbel; Steffi Gebauer-Jung; Thomas Wiehe (German Conference on Bioinformatics, 2001)

Calculating the SNP-effective sample size from an alignment. - Bernhard Haubold; Thomas Wiehe (Bioinform., 2002)

gff2aplot: Plotting sequence comparisons. - Josep F. Abril; Roderic Guigó; Thomas Wiehe (Bioinform., 2003)

Genome comparison without alignment using shortest unique substrings. - Bernhard Haubold; Nora Pierstorff; Friedrich Möller; Thomas Wiehe (BMC Bioinform., 2005)

Introduction to computational biology - an evolutionary approach. - Bernhard Haubold; Thomas Wiehe (Springer, 2006)

Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA. - Nora Pierstorff; Casey M. Bergman; Thomas Wiehe (Bioinform., 2006)

How repetitive are genomes? - Bernhard Haubold; Thomas Wiehe (BMC Bioinform., 2006)

Self-Alignments to Detect Mutually Exclusive Exon Usage. - Martin Stephan; Friedrich Möller; Thomas Wiehe; Jürgen Kleffe (Silico Biol., 2007)

An Alignment-Free Distance Measure for Closely Related Genomes. - Bernhard Haubold; Mirjana Domazet-Loso; Thomas Wiehe (RECOMB-CG, 2008)

Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralogs in Arabidopsis thaliana. - Dale N. Richardson; Thomas Wiehe (RECOMB-CG, 2009)

Simulation of DNA sequence evolution under models of recent directional selection. - Yuseob Kim; Thomas Wiehe (Briefings Bioinform., 2009)

Estimating Mutation Distances from Unaligned Genomes. - Bernhard Haubold; Peter Pfaffelhuber; Mirjana Domazet-Loso; Thomas Wiehe (J. Comput. Biol., 2009)

Some combinatorial problems on binary rooted trees occurring in population genetics - Filippo Disanto; Thomas Wiehe (CoRR, 2011)

Some instances of a sub-permutation problem on pattern avoiding permutations - Filippo Disanto; Thomas Wiehe (CoRR, 2012)

Coalescent Tree Imbalance and a Simple Test for Selective Sweeps Based on Microsatellite Variation. - Haipeng Li; Thomas Wiehe (PLoS Comput. Biol., 2013)

On the sub-permutations of pattern avoiding permutations. - Filippo Disanto; Thomas Wiehe (Discret. Math., 2014)

Strings&Structures. - Jürgen Rolshoven; Valmir Etimi; Peter Seipel; Thomas Wiehe (DHd, 2018)

Adaptation in structured populations and fuzzy boundaries between hard and soft sweeps. - Yichen Zheng; Thomas Wiehe (PLoS Comput. Biol., 2019)