Dynamic simulation of protein complex formation on a genomic scale. - Andreas Beyer; Thomas Wilhelm 003 (Bioinform., 2005)

The New Classification Scheme of the Genetic Code, its Early Evolution, and Trna Usage. - Swetlana Nikolajewa; Maik Friedel; Andreas Beyer; Thomas Wilhelm 003 (J. Bioinform. Comput. Biol., 2006)

Integrated Assessment and Prediction of Transcription Factor Binding. - Andreas Beyer; Christopher T. Workman; Jens Hollunder; Dörte Radke; Ulrich Möller; Thomas Wilhelm 003; Trey Ideker (PLoS Comput. Biol., 2006)

DASS: efficient discovery and p-value calculation of substructures in unordered data. - Jens Hollunder; Maik Friedel; Andreas Beyer; Christopher T. Workman; Thomas Wilhelm 003 (Bioinform., 2007)

Boolean networks with biologically relevant rules show ordered behavior. - Swetlana Nikolajewa; Maik Friedel; Thomas Wilhelm 003 (Biosyst., 2007)

Posttranscriptional Expression Regulation: What Determines Translation Rates? - Regina Brockmann; Andreas Beyer; Jürgen J. Heinisch; Thomas Wilhelm 003 (PLoS Comput. Biol., 2007)

The Decomposition Tree for analyses of Boolean functions. - Maik Friedel; Swetlana Nikolajewa; Thomas Wilhelm 003 (Math. Struct. Comput. Sci., 2008)

DiProGB: the dinucleotide properties genome browser. - Maik Friedel; Swetlana Nikolajewa; Jürgen Sühnel; Thomas Wilhelm 003 (Bioinform., 2009)

The smallest chemical reaction system with bistability. - Thomas Wilhelm 003 (BMC Syst. Biol., 2009)

DiProDB: a database for dinucleotide properties. - Maik Friedel; Swetlana Nikolajewa; Jürgen Sühnel; Thomas Wilhelm 003 (Nucleic Acids Res., 2009)

DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data. - Jens Hollunder; Maik Friedel; Martin Kuiper; Thomas Wilhelm 003 (Bioinform., 2010)

Phenotype prediction based on genome-wide DNA methylation data. - Thomas Wilhelm 003 (BMC Bioinform., 2014)

Super Natural II - a database of natural products. - Priyanka Banerjee; Jevgeni Erehman; Björn-Oliver Gohlke; Thomas Wilhelm 003; Robert Preissner; Mathias Dunkel (Nucleic Acids Res., 2015)