Batch tautomer generation with MolTPC. - Thorsten Will; Michael C. Hutter; Johann Jauch; Volkhard Helms (J. Comput. Chem., 2013)

Identifying transcription factor complexes and their roles. - Thorsten Will; Volkhard Helms (Bioinform., 2014)

PPIXpress: construction of condition-specific protein interaction networks based on transcript expression. - Thorsten Will; Volkhard Helms (Bioinform., 2016)

Identification of key player genes in gene regulatory networks. - Maryam Nazarieh; Andreas Wiese; Thorsten Will; Mohamed Hamed; Volkhard Helms (BMC Syst. Biol., 2016)

Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare. - Thorsten Will; Volkhard Helms (BMC Syst. Biol., 2017)

Differential analysis of combinatorial protein complexes with CompleXChange. - Thorsten Will; Volkhard Helms (BMC Bioinform., 2019)

TFmiR2: constructing and analyzing disease-, tissue- and process-specific transcription factor and microRNA co-regulatory networks. - Maryam Nazarieh; Mohamed Hamed; Christian Spaniol; Thorsten Will; Volkhard Helms (Bioinform., 2020)

From condition-specific interactions towards the differential complexome of proteins. - Thorsten Will (2020)

Detecting Rewiring Events in Protein-Protein Interaction Networks Based on Transcriptomic Data. - Markus Hollander; Trang Do; Thorsten Will; Volkhard Helms (Frontiers Bioinform., 2021)