Antialiasing with Line Samples. - Thouis R. Jones; Ronald N. Perry (Rendering Techniques, 2000)

Adaptively sampled distance fields: a general representation of shape for computer graphics. - Sarah F. Frisken Gibson; Ronald N. Perry; Alyn P. Rockwood; Thouis R. Jones (SIGGRAPH, 2000)

Example-Based Super-Resolution. - William T. Freeman; Thouis R. Jones; Egon C. Pasztor (IEEE Computer Graphics and Applications, 2002)

Non-iterative, feature-preserving mesh smoothing. - Thouis R. Jones; Frédo Durand; Mathieu Desbrun (ACM Trans. Graph., 2003)

Interpolation search for non-independent data. - Erik D. Demaine; Thouis R. Jones; Mihai Patrascu (SODA, 2004)

Normal Improvement for Point Rendering. - Thouis R. Jones; Frédo Durand; Matthias Zwicker (IEEE Computer Graphics and Applications, 2004)

Voronoi-Based Segmentation of Cells on Image Manifolds. - Thouis R. Jones; Anne E. Carpenter; Polina Golland (CVBIA, 2005)

Efficient Generation of Poisson-Disk Sampling Patterns. - Thouis R. Jones (J. Graph. Tools, 2006)

CellProfiler Analyst: data exploration and analysis software for complex image-based screens. - Thouis R. Jones; In Han Kang; Douglas B. Wheeler; Robert A. Lindquist; Adam Papallo; David M. Sabatini; Polina Golland; Anne E. Carpenter (BMC Bioinform., 2008)

Towards automated high-throughput screening of C. elegans on agar - Mayank Kabra; Annie L. Conery; Eyleen J. O'Rourke; Xin Xie; Vebjorn Ljosa; Thouis R. Jones; Frederick M. Ausubel; Gary Ruvkun; Anne E. Carpenter; Yoav Freund (CoRR, 2010)

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software. - Lee Kamentsky; Thouis R. Jones; Adam Fraser; Mark-Anthony Bray; David J. Logan; Katherine L. Madden; Vebjorn Ljosa; Curtis Rueden; Kevin W. Eliceiri; Anne E. Carpenter (Bioinform., 2011)

Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images. - Vasanth R. Singan; Thouis R. Jones; Kathleen M. Curran; Jeremy C. Simpson (BMC Bioinform., 2011)

Linear-Time Poisson-Disk Patterns. - Thouis R. Jones; David R. Karger (J. Graphics, GPU, & Game Tools, 2011)

Large-scale automatic reconstruction of neuronal processes from electron microscopy images. - Verena Kaynig; Amelio Vázquez Reina; Seymour Knowles-Barley; Mike Roberts 001; Thouis R. Jones; Narayanan Kasthuri; Eric L. Miller 001; Jeff Lichtman; Hanspeter Pfister (Medical Image Anal., 2015)

RhoanaNet Pipeline: Dense Automatic Neural Annotation. - Seymour Knowles-Barley; Verena Kaynig; Thouis Ray Jones; Alyssa Wilson; Joshua Morgan; Dongil Lee; Daniel R. Berger; Narayanan Kasthuri; Jeff W. Lichtman; Hanspeter Pfister (CoRR, 2016)

A Multi-Pass Approach to Large-Scale Connectomics. - Yaron Meirovitch; Alexander Matveev; Hayk Saribekyan; David M. Budden; David Rolnick; Gergely Ódor; Seymour Knowles-Barley; Thouis Raymond Jones; Hanspeter Pfister; Jeff William Lichtman; Nir Shavit (CoRR, 2016)

ICON: An interactive approach to train deep neural networks for segmentation of neuronal structures. - Felix Gonda; Verena Kaynig; Thouis R. Jones; Daniel Haehn; Jeff W. Lichtman; Toufiq Parag; Hanspeter Pfister (ISBI, 2017)

Scalable Interactive Visualization for Connectomics. - Daniel Haehn; John Hoffer; Brian Matejek; Adi Suissa-Peleg; Ali K. Al-Awami; Lee Kamentsky; Felix Gonda; Eagon Meng; William Zhang; Richard Schalek; Alyssa Wilson; Toufiq Parag; et al. (Informatics, 2017)

Two Stream Active Query Suggestion for Active Learning in Connectomics. - Zudi Lin; Donglai Wei 001; Won-Dong Jang; Siyan Zhou; Xupeng Chen; Xueying Wang 002; Richard Schalek; Daniel R. Berger; Brian Matejek; Lee Kamentsky; Adi Suissa-Peleg; Daniel Haehn; et al. (ECCV (18), 2020)

CellProfiler Analyst Web (CPAW) - Exploration, analysis, and classification of biological images on the web. - Bella Baidak; Yahiya Hussain; Emma Kelminson; Thouis R. Jones; Loraine Franke; Daniel Haehn (IEEE VIS (Short Papers), 2021)