Systems analysis of iron metabolism: the network of iron pools and fluxes. - Tiago J. S. Lopes; Tatyana Luganskaja; Maja Vujic Spasic; Matthias W. Hentze; Martina U. Muckenthaler; Klaus Schümann; Jens G. Reich (BMC Syst. Biol., 2010)

Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases. - Tiago J. S. Lopes; Martin H. Schaefer 001; Jason E. Shoemaker; Yukiko Matsuoka; Jean-Fred Fontaine; Gabriele Neumann; Miguel A. Andrade-Navarro; Yoshihiro Kawaoka; Hiroaki Kitano (Bioinform., 2011)

A comprehensive map of the influenza A virus replication cycle. - Yukiko Matsuoka; Hiromi Matsumae; Manami Katoh; Amie J. Eisfeld; Gabriele Neumann; Takeshi Hase; Samik Ghosh; Jason E. Shoemaker; Tiago J. S. Lopes; Tokiko Watanabe; Shinji Watanabe 007; Satoshi Fukuyama; et al. (BMC Syst. Biol., 2013)

Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions. - Martin H. Schaefer 001; Tiago J. S. Lopes; Nancy Mah; Jason E. Shoemaker; Yukiko Matsuoka; Jean-Fred Fontaine; Caroline Louis-Jeune; Amie J. Eisfeld; Gabriele Neumann; Carol Perez-Iratxeta; Yoshihiro Kawaoka; Hiroaki Kitano; et al. (PLoS Comput. Biol., 2013)

GetLB: Balanceamento de Carga Eficiente para o Escalonamento de Transações Eletrônicas Financeiras. - Rodrigo da Rosa Righi; Cristiano André da Costa; Lucas Graebin; Tiago J. S. Lopes; Alexandre Luis Andrade (Braz. J. Inf. Syst., 2014)

Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens. - Deborah Chasman; Kevin B. Walters; Tiago J. S. Lopes; Amie J. Eisfeld; Yoshihiro Kawaoka; Sushmita Roy (PLoS Comput. Biol., 2016)

A Machine Learning Framework Predicts the Clinical Severity of Hemophilia B Caused by Point-Mutations. - Tiago J. S. Lopes; Tatiane M. Nogueira; Ricardo Araújo Rios (Frontiers Bioinform., 2022)

Modeling Protein Activities and Mutations with Graph Neural Networks: Insights into Hemophilia. - Marcos Vinicius Ferreira; Tiago J. S. Lopes; Ricardo Araújo Rios; Tatiane Nogueira Rios (IJCNN, 2023)

A graph-based machine learning framework identifies critical properties of FVIII that lead to hemophilia A. - Marcos Vinicius Ferreira; Tatiane Nogueira Rios; Ricardo Araújo Rios; Tiago J. S. Lopes (Frontiers Bioinform., 2023)