PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders. - Mehdi Joodaki; Mina Shaigan; Samaneh Samiei; James Shiniti Nagai; Tiago Maié; Christoph Kuppe; Ivan G. Costa (Briefings Bioinform., 2025)

scACCorDiON: a clustering approach for explainable patient level cell-cell communication graph analysis. - James Shiniti Nagai; Tiago Maié; Michael T. Schaub; Ivan G. Costa (Bioinform., 2025)