End-to-end Deep Reinforcement Learning for Targeted Drug Generation. - Tiago Oliveira Pereira 001; Maryam Abbasi; Bernardete Ribeiro; Joel P. Arrais (ICCBB, 2020)

Optimizing Recurrent Neural Network Architectures for De Novo Drug Design. - Beatriz P. Santos; Maryam Abbasi; Tiago Pereira 001; Bernardete Ribeiro; Joel P. Arrais (CBMS, 2021)

Multiobjective Reinforcement Learning in Optimized Drug Design. - Maryam Abbasi; Tiago Pereira 001; Beatriz P. Santos; Bernardete Ribeiro; Joel Arrais (ESANN, 2021)

Improvement on Generative Adversarial Network for Targeted Drug Design. - Beatriz P. Santos; Maryam Abbasi; Tiago Pereira 001; Bernardete Ribeiro; Joel Arrais (ESANN, 2021)

Optimizing blood-brain barrier permeation through deep reinforcement learning for de novo drug design. - Tiago Pereira 001; Maryam Abbasi; José Luís Oliveira; Bernardete Ribeiro; Joel Arrais (Bioinform., 2021)

Diversity oriented Deep Reinforcement Learning for targeted molecule generation. - Tiago Pereira 001; Maryam Abbasi; Bernardete Ribeiro; Joel P. Arrais (J. Cheminformatics, 2021)

Deep generative model for therapeutic targets using transcriptomic disease-associated data - USP7 case study. - Tiago Pereira 001; Maryam Abbasi; Rita I. Oliveira; Romina A. Guedes; Jorge A. R. Salvador; Joel P. Arrais (Briefings Bioinform., 2022)

Enhancing reinforcement learning for de novo molecular design applying self-attention mechanisms. - Tiago O. Pereira 001; Maryam Abbasi; Joel P. Arrais (Briefings Bioinform., 2023)

FSM-DDTR: End-to-end feedback strategy for multi-objective De Novo drug design using transformers. - Nelson R. C. Monteiro; Tiago Pereira 001; Ana Catarina D. Machado; José Luís Oliveira; Maryam Abbasi; Joel P. Arrais (Comput. Biol. Medicine, 2023)

Artificial intelligence for prediction of biological activities and generation of molecular hits using stereochemical information. - Tiago O. Pereira 001; Maryam Abbasi; Rita I. Oliveira; Romina A. Guedes; Jorge A. R. Salvador; Joel P. Arrais (J. Comput. Aided Mol. Des., 2023)

ABIET: An explainable transformer for identifying functional groups in biological active molecules. - Tiago O. Pereira 001; Maryam Abbasi; Joel P. Arrais (Comput. Biol. Medicine, 2025)