A framework for robust differential network modular structure discovery from RNA-seq data. - Tianle Ma; Aidong Zhang (BIBM, 2016)

Integrate multi-omic data using affinity network fusion (ANF) for cancer patient clustering. - Tianle Ma; Aidong Zhang (BIBM, 2017)

Omics Informatics: From Scattered Individual Software Tools to Integrated Workflow Management Systems. - Tianle Ma; Aidong Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Multi-view Factorization AutoEncoder with Network Constraints for Multi-omic Integrative Analysis. - Tianle Ma; Aidong Zhang (BIBM, 2018)

Biomimetic walking mechanisms: Kinematic parameters of goats walking on different slopes. - Fu Zhang; Yafei Wang; Limin Zheng; Tianle Ma; Jiajia Wang (Concurr. Comput. Pract. Exp., 2018)

Multi-omic integrative network analysis. - Tianle Ma (2018)

AffinityNet: Semi-Supervised Few-Shot Learning for Disease Type Prediction. - Tianle Ma; Aidong Zhang (AAAI, 2019)

Incorporating Biological Knowledge with Factor Graph Neural Network for Interpretable Deep Learning. - Tianle Ma; Aidong Zhang (CoRR, 2019)

PERGAT: Pretrained Embeddings of Graph Neural Networks for miRNA-Cancer Association Prediction. - Sa Li; Jonah Shader; Tianle Ma (BIBM, 2024)

A Two-Phase Visualization System for Continuous Human-AI Collaboration in Sequelae Analysis and Modeling. - Yang Ouyang; Chenyang Zhang 002; He Wang; Tianle Ma; Chang Jiang; Yuheng Yan; Zuoqin Yan; Xiaojuan Ma; Chuhan Shi; Quan Li (IEEE VIS, 2024)

Intelligent jamming decision-making system based on reinforcement learning. - Xia Xiong; Shengbo Hu; Tingting Yan; Zehua Xing; Tianle Ma; Kangjun Yin; Jianbo Wang; Xu Wei (Comput. Electr. Eng., 2025)