SEPPA 2.0 - more refined server to predict spatial epitope considering species of immune host and subcellular localization of protein antigen. - Tao Qi; Tianyi Qiu; Qingchen Zhang; Kailin Tang; Yangyang Fan; Jingxuan Qiu; Dingfeng Wu; Wei Zhang; Yanan Chen; Jun Gao; Ruixin Zhu; Zhiwei Cao (Nucleic Acids Res., 2014)

Robust compensation of electromechanical delay during neuromuscular electrical stimulation of antagonistic muscles. - Tianyi Qiu; Naji Alibeji; Nitin Sharma 001 (ACC, 2016)

The recent progress in proteochemometric modelling: focusing on target descriptors, cross-term descriptors and application scope. - Tianyi Qiu; Jingxuan Qiu; Jun Feng; Dingfeng Wu; Yiyan Yang; Kailin Tang; Zhiwei Cao; Ruixin Zhu (Briefings Bioinform., 2017)

Ripple vs. SWIFT: Transforming Cross Border Remittance Using Blockchain Technology. - Tianyi Qiu; Ruidong Zhang; Yuan Gao (IIKI, 2018)

Finding the molecular scaffold of nuclear receptor inhibitors through high-throughput screening based on proteochemometric modelling. - Tianyi Qiu; Dingfeng Wu; Jingxuan Qiu; Zhiwei Cao (J. Cheminformatics, 2018)

SEPPA 3.0 - enhanced spatial epitope prediction enabling glycoprotein antigens. - Chen Zhou; Zikun Chen; Lu Zhang; Deyu Yan; Tiantian Mao; Kailin Tang; Tianyi Qiu; Zhiwei Cao (Nucleic Acids Res., 2019)

Predicting the Antigenic Relationship of Foot-and-Mouth Disease Virus for Vaccine Selection Through a Computational Model. - Jingxuan Qiu; Tianyi Qiu; Qingli Dong; Dongpo Xu; Xiang Wang; Qi Zhang; Jing Pan; Qing Liu (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

AI Alignment: A Comprehensive Survey. - Jiaming Ji; Tianyi Qiu; Boyuan Chen 008; Borong Zhang; Hantao Lou; Kaile Wang; Yawen Duan; Zhonghao He; Jiayi Zhou; Zhaowei Zhang; Fanzhi Zeng; Kwan Yee Ng; et al. (CoRR, 2023)

Continuous Switching Control of an Input-Delayed Antagonistic Muscle Pair During Functional Electrical Stimulation. - Ziyue Sun; Tianyi Qiu; Ashwin Iyer; Brad E. Dicianno; Nitin Sharma 001 (IEEE Trans. Control. Syst. Technol., 2023)

SEPPA-mAb: spatial epitope prediction of protein antigens for mAbs. - Tianyi Qiu; Lu Zhang; Zikun Chen; Yuan Wang; Tiantian Mao; Caicui Wang; Yewei Cun; Genhui Zheng; Deyu Yan; Mengdi Zhou; Kailin Tang; Zhiwei Cao (Nucleic Acids Res., 2023)

Aligner: Efficient Alignment by Learning to Correct. - Jiaming Ji; Boyuan Chen 008; Hantao Lou; Donghai Hong; Borong Zhang; Xuehai Pan; Tianyi Qiu; Juntao Dai; Yaodong Yang 001 (NeurIPS, 2024)

ProgressGym: Alignment with a Millennium of Moral Progress. - Tianyi Qiu; Yang Zhang; Xuchuan Huang; Jasmine Xinze Li; Jiaming Ji; Yaodong Yang 001 (NeurIPS, 2024)

Advances in phage-host interaction prediction: in silico method enhances the development of phage therapies. - Wanchun Nie; Tianyi Qiu; Yiwen Wei; Hao Ding; Zhixiang Guo; Jingxuan Qiu (Briefings Bioinform., 2024)

Advances of computational methods enhance the development of multi-epitope vaccines. - Yiwen Wei; Tianyi Qiu; Yisi Ai; Yuxi Zhang; Junting Xie; Dong Zhang; Xiaochuan Luo; Xiulan Sun; Xin Wang; Jingxuan Qiu (Briefings Bioinform., 2024)

PbsNRs: predict the potential binders and scaffolds for nuclear receptors. - Genhui Zheng; Dingfeng Wu; Xiuxia Wei; Dongpo Xu; Tiantian Mao; Deyu Yan; Wenhao Han; Xiaoxiao Shang; Zikun Chen; Jingxuan Qiu; Kailin Tang; Zhiwei Cao; et al. (Briefings Bioinform., 2024)

Rethinking Information Structures in RLHF: Reward Generalization from a Graph Theory Perspective. - Tianyi Qiu; Fanzhi Zeng; Jiaming Ji; Dong Yan; Kaile Wang; Jiayi Zhou; Han Yang; Josef Dai; Xuehai Pan; Yaodong Yang 001 (CoRR, 2024)

Language Models Resist Alignment. - Jiaming Ji; Kaile Wang; Tianyi Qiu; Boyuan Chen 008; Jiayi Zhou; Changye Li 003; Hantao Lou; Yaodong Yang 001 (CoRR, 2024)

PKU-SafeRLHF: A Safety Alignment Preference Dataset for Llama Family Models. - Jiaming Ji; Donghai Hong; Borong Zhang; Boyuan Chen 008; Josef Dai; Boren Zheng; Tianyi Qiu; Boxun Li; Yaodong Yang 001 (CoRR, 2024)

Representative Social Choice: From Learning Theory to AI Alignment. - Tianyi Qiu (CoRR, 2024)

Align Anything: Training All-Modality Models to Follow Instructions with Language Feedback. - Jiaming Ji; Jiayi Zhou; Hantao Lou; Boyuan Chen 008; Donghai Hong; Xuyao Wang; Wenqi Chen; Kaile Wang; Rui Pan; Jiahao Li; Mohan Wang; Josef Dai; et al. (CoRR, 2024)

PB-LKS: a python package for predicting phage-bacteria interaction through local K-mer strategy. - Jingxuan Qiu; Wanchun Nie; Hao Ding; Jia Dai; Yiwen Wei; Dezhi Li; Yuxi Zhang; Junting Xie; Xinxin Tian; Nannan Wu; Tianyi Qiu (Briefings Bioinform., 2024)

PKU-SafeRLHF: Towards Multi-Level Safety Alignment for LLMs with Human Preference. - Jiaming Ji; Donghai Hong; Borong Zhang; Boyuan Chen 008; Josef Dai; Boren Zheng; Tianyi Alex Qiu; Jiayi Zhou; Kaile Wang; Boxun Li; Sirui Han; Yike Guo; et al. (ACL (1), 2025)

Language Models Resist Alignment: Evidence From Data Compression. - Jiaming Ji; Kaile Wang; Tianyi Alex Qiu; Boyuan Chen 008; Jiayi Zhou; Changye Li 003; Hantao Lou; Josef Dai; Yunhuai Liu; Yaodong Yang 001 (ACL (1), 2025)

Reward Generalization in RLHF: A Topological Perspective. - Tianyi Alex Qiu; Fanzhi Zeng; Jiaming Ji; Dong Yan; Kaile Wang; Jiayi Zhou; Yang Han; Josef Dai; Xuehai Pan; Yaodong Yang 001 (ACL (Findings), 2025)

The Lock-in Hypothesis: Stagnation by Algorithm. - Tianyi Alex Qiu; Zhonghao He; Tejasveer Chugh; Max Kleiman-Weiner (CoRR, 2025)

Auditing Black-Box LLM APIs with a Rank-Based Uniformity Test. - Xiaoyuan Zhu; Yaowen Ye; Tianyi Qiu; Hanlin Zhu; Sijun Tan; Ajraf Mannan; Jonathan Michala; Raluca Ada Popa; Willie Neiswanger (CoRR, 2025)