PROTINFO: new algorithms for enhanced protein structure predictions. - Ling-Hong Hung; Shing-Chung Ngan; Tianyun Liu; Ram Samudrala (Nucleic Acids Res., 2005)

Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding. - Tianyun Liu; Russ B. Altman (PLoS Comput. Biol., 2011)

Relating Essential Proteins to Drug Side-Effects Using Canonical Component Analysis: A Structure-Based Approach. - Tianyun Liu; Russ B. Altman (J. Chem. Inf. Model., 2015)

Variations in the Binding Pocket of an Inhibitor of the Bacterial Division Protein FtsZ across Genotypes and Species. - Amanda Miguel; Jen Hsin; Tianyun Liu; Grace W. Tang; Russ B. Altman; Kerwyn Casey Huang (PLoS Comput. Biol., 2015)

PathFX provides mechanistic insights into drug efficacy and safety for regulatory review and therapeutic development. - Jennifer L. Wilson; Rebecca Racz; Tianyun Liu; Oluseyi Adeniyi; Jielin Sun; Anuradha Ramamoorthy; Michael Pacanowski; Russ B. Altman (PLoS Comput. Biol., 2018)

Computational analysis of kinase inhibitor selectivity using structural knowledge. - Yu-Chen Lo; Tianyun Liu; Kari M. Morrissey; Satoko Kakiuchi-Kiyota; Adam R. Johnson; Fabio Broccatelli; Yu Zhong; Amita Joshi; Russ B. Altman (Bioinform., 2019)

Identification of fake stereo audio. - Tianyun Liu; Diqun Yan (CoRR, 2021)

Identification of Fake Stereo Audio Using SVM and CNN. - Tianyun Liu; Diqun Yan; Rangding Wang; Nan Yan; Gang Chen (Inf., 2021)

Antiforensics of Speech Resampling Using Dual-Path Strategy. - Diqun Yan; Yongkang Gong; Tianyun Liu (Wirel. Commun. Mob. Comput., 2021)

Anti-forensics of fake stereo audio using generative adversarial network. - Tianyun Liu; Diqun Yan; Nan Yan; Gang Chen (Multim. Tools Appl., 2022)

Construction of disease-specific cytokine profiles by associating disease genes with immune responses. - Tianyun Liu; Shiyin Wang; Michael Wornow; Russ B. Altman (PLoS Comput. Biol., 2022)

Enhancing Table Retrieval with Dual Graph Representations. - Tianyun Liu; Xinghua Zhang 001; Zhenyu Zhang 006; Yubin Wang; Quangang Li; Shuai Zhang; Tingwen Liu (ECML/PKDD (4), 2023)

Learning Structural Co-occurrences for Structured Web Data Extraction in Low-Resource Settings. - Zhenyu Zhang 006; Bowen Yu 002; Tingwen Liu; Tianyun Liu; Yubin Wang; Li Guo 001 (WWW, 2023)

FFT: Towards Harmlessness Evaluation and Analysis for LLMs with Factuality, Fairness, Toxicity. - Shiyao Cui; Zhenyu Zhang 006; Yilong Chen; Wenyuan Zhang 002; Tianyun Liu; Siqi Wang; Tingwen Liu (CoRR, 2023)

SOTOPIA-: Dynamic Strategy Injection Learning and Social Instruction Following Evaluation for Social Agents. - Wenyuan Zhang; Tianyun Liu; Mengxiao Song; Xiaodong Li; Tingwen Liu (ACL (1), 2025)

Dual-perspective Data Augmentation and Curriculum Learning Framework for Low-resource Complex Named Entity Recognition. - Mengxiao Song; Tianyun Liu; Wenyuan Zhang 002; Quangang Li; Tingwen Liu (SIGIR, 2025)

SOTOPIA-Ω: Dynamic Strategy Injection Learning and Social Instruction Following Evaluation for Social Agents. - Wenyuan Zhang; Tianyun Liu; Mengxiao Song; Xiaodong Li; Tingwen Liu (CoRR, 2025)

Clip-TTS: Contrastive Text-content and Mel-spectrogram, A High-Huality Text-to-Speech Method based on Contextual Semantic Understanding. - Tianyun Liu (CoRR, 2025)