ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing. - Zhi Jin; Sheng Xu; Xiang Zhang 011; Tianze Ling; Nanqing Dong; Wanli Ouyang; Zhiqiang Gao; Cheng Chang; Siqi Sun (AAAI, 2024)

NovoBench: Benchmarking Deep Learning-based emph{De Novo} Sequencing Methods in Proteomics. - Jingbo Zhou; Shaorong Chen; Jun Xia 001; Sizhe Liu; Tianze Ling; Wenjie Du 003; Yue Liu 008; Jianwei Yin; Stan Z. Li (NeurIPS, 2024)

AdaNovo: Adaptive emph{De Novo} Peptide Sequencing with Conditional Mutual Information. - Jun Xia 001; Shaorong Chen; Jingbo Zhou; Tianze Ling; Wenjie Du 003; Sizhe Liu; Stan Z. Li (CoRR, 2024)

NovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics. - Jingbo Zhou; Shaorong Chen; Jun Xia 001; Sizhe Liu; Tianze Ling; Wenjie Du 003; Yue Liu 008; Jianwei Yin; Stan Z. Li (CoRR, 2024)

Introducing π-HelixNovo for practical large-scale de novo peptide sequencing. - Tingpeng Yang; Tianze Ling; Boyan Sun; Zhendong Liang; Fan Xu; Xiansong Huang; Linhai Xie; Yonghong He; Leyuan Li; Fuchu He; Yu Wang; Cheng Chang (Briefings Bioinform., 2024)