Computational Identification of Cis-regulatory Elements Associated with Pungency of Chili Peppers. - Tieming Ji; Desh Ranjan; Jeanne Curry; Mary O'Connell (BIBE, 2007)

Tools for Cis-element Recognition and Phylogenetic Tree Construction Based on Conserved Patterns. - Tieming Ji; K. Gopavarapu; Desh Ranjan; B. Vasudevan; Champa Sengupta-Gopalan; Mary O'Connell (CATA, 2007)

Detecting differentially expressed genes for syndromes by considering change in mean and dispersion simultaneously. - Chenchen Ma; Tieming Ji (BMC Bioinform., 2018)

Modeling allele-specific expression at the gene and SNP levels simultaneously by a Bayesian logistic mixed regression model. - Jing Xie 008; Tieming Ji; Marco A. R. Ferreira; Yahan Li; Bhaumik N. Patel; Rocio M. Rivera (BMC Bioinform., 2019)

BICOSS: Bayesian iterative conditional stochastic search for GWAS. - Jacob Williams; Marco A. R. Ferreira; Tieming Ji (BMC Bioinform., 2022)