Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers. - Tien-ho Lin; Eugene W. Myers; Eric P. Xing (ISMB (Supplement of Bioinformatics), 2006)

Alignment and classification of time series gene expression in clinical studies. - Tien-ho Lin; Naftali Kaminski; Ziv Bar-Joseph (ISMB, 2008)

BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes. - Tien-ho Lin; Pradipta Ray; Geir Kjetil Sandve; Selen Uguroglu; Eric P. Xing (RECOMB, 2008)

Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs. - Tien-ho Lin; Ziv Bar-Joseph; Robert F. Murphy (J. Comput. Biol., 2011)

Discriminative Motif Finding for Predicting Protein Subcellular Localization. - Tien-ho Lin; Robert F. Murphy; Ziv Bar-Joseph (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)