A Framework for Identifying Affinity Classes of Inorganic Materials Binding Peptide Sequences. - Nan Du 001; Marc R. Knecht; Paras N. Prasad; Mark T. Swihart; Tiffany R. Walsh; Aidong Zhang (BCB, 2013)

Identifying inorganic material affinity classes for peptide sequences based on context learning. - Guangxu Xun; Xiaoyi Li; Marc R. Knecht; Paras N. Prasad; Mark T. Swihart; Tiffany R. Walsh; Aidong Zhang (BIBM, 2015)

An improved TIGER2 implementation for NAMD suitable for the Blue Gene architecture. - Aaron H. Brown; Tiffany R. Walsh (Comput. Phys. Commun., 2015)

Identifying Affinity Classes of Inorganic Materials Binding Sequences via a Graph-Based Model. - Nan Du 001; Marc R. Knecht; Mark T. Swihart; Zhenghua Tang; Tiffany R. Walsh; Aidong Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Calculation of 1D and 2D densities in VMD: A flexible and easy-to-use code. - Yuxiang Wang; Alper Kiziltas; Patrick Blanchard; Tiffany R. Walsh (Comput. Phys. Commun., 2021)

ContactAngleCalculator: An Automated, Parametrized, and Flexible Code for Contact Angle Estimation in Visual Molecular Dynamics. - Yuxiang Wang; Alper Kiziltas; Patrick Blanchard; Tiffany R. Walsh (J. Chem. Inf. Model., 2022)