GraphCrunch: A tool for large network analyses. - Tijana Milenkovic; Jason Lai; Natasa Przulj (BMC Bioinform., 2008)

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets. - Hsiang Ho; Tijana Milenkovic; Vesna Memisevic; Jayavani Aruri; Natasa Przulj; Anand K. Ganesan (BMC Syst. Biol., 2010)

An integrative approach to modeling biological networks. - Vesna Memisevic; Tijana Milenkovic; Natasa Przulj (J. Integr. Bioinform., 2010)

Complementarity of network and sequence information in homologous proteins. - Vesna Memisevic; Tijana Milenkovic; Natasa Przulj (J. Integr. Bioinform., 2010)

Graphlet-based edge clustering reveals pathogen-interacting proteins. - Ryan W. Solava; Ryan P. Michaels; Tijana Milenkovic (Bioinform., 2012)

Identifying edge clusters in networks via edge graphlet degree vectors (edge-GDVs) and edge-GDV-similarities - Ryan W. Solava; Ryan P. Michaels; Tijana Milenkovic (CoRR, 2012)

Using Global Network Alignment In The Context Of Aging. - Tijana Milenkovic; Han Zhao 002; Fazle Elahi Faisal (BCB, 2013)

Improving identification of key players in aging via network de-noising. - Boyoung Yoo; Huili Chen; Fazle Elahi Faisal; Tijana Milenkovic (BCB, 2014)

Systematic Dynamic and Heterogeneous Analysis of Rich Social Network Data. - Lei Meng 007; Tijana Milenkovic; Aaron Striegel (CompleNet, 2014)

Dynamic networks reveal key players in aging. - Fazle Elahi Faisal; Tijana Milenkovic (Bioinform., 2014)

MAGNA: Maximizing Accuracy in Global Network Alignment. - Vikram Saraph; Tijana Milenkovic (Bioinform., 2014)

Network analysis improves interpretation of affective physiological data†. - Yuriy Hulovatyy; Sidney K. D'Mello; Rafael A. Calvo; Tijana Milenkovic (J. Complex Networks, 2014)

Networks' characteristics are important for systems biology. - Andrew K. Rider; Tijana Milenkovic; Geoffrey H. Siwo; Richard S. Pinapati (Netw. Sci., 2014)

GREAT: GRaphlet Edge-based network AlignmenT. - Joseph Crawford; Tijana Milenkovic (BIBM, 2015)

Simultaneous Optimization of both Node and Edge Conservation in Network Alignment via WAVE. - Yihan Sun 001; Joseph Crawford; Jie Tang 001; Tijana Milenkovic (WABI, 2015)

Fair evaluation of global network aligners. - Joseph Crawford; Yihan Sun 001; Tijana Milenkovic (Algorithms Mol. Biol., 2015)

Exploring the structure and function of temporal networks with dynamic graphlets. - Yuriy Hulovatyy; Huili Chen; Tijana Milenkovic (Bioinform., 2015)

MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation. - Vipin Vijayan; Vikram Saraph; Tijana Milenkovic (Bioinform., 2015)

Proper evaluation of alignment-free network comparison methods. - Ömer Nebil Yaveroglu; Tijana Milenkovic; Natasa Przulj (Bioinform., 2015)

The post-genomic era of biological network alignment. - Fazle Elahi Faisal; Lei Meng 007; Joseph Crawford; Tijana Milenkovic (EURASIP J. Bioinform. Syst. Biol., 2015)

Global Network Alignment in the Context of Aging. - Fazle Elahi Faisal; Han Zhao 002; Tijana Milenkovic (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Local versus global biological network alignment. - Lei Meng 007; Aaron Striegel; Tijana Milenkovic (Bioinform., 2016)

SCOUT: simultaneous time segmentation and community detection in dynamic networks. - Yuriy Hulovatyy; Tijana Milenkovic (CoRR, 2016)

On the Interplay Between Individuals' Evolving Interaction Patterns and Traits in Dynamic Multiplex Social Networks. - Lei Meng 007; Yuriy Hulovatyy; Aaron Striegel; Tijana Milenkovic (IEEE Trans. Netw. Sci. Eng., 2016)

Alignment of dynamic networks. - Vipin Vijayan; Dominic Critchlow; Tijana Milenkovic (Bioinform., 2017)

Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods. - Ömer Nebil Yaveroglu; Noël Malod-Dognin; Tijana Milenkovic; Natasa Przulj (Bioinform., 2017)

Improving Identification of Key Players in Aging via Network De-Noising and Core Inference. - Boyoung Yoo; Fazle Elahi Faisal; Huili Chen; Tijana Milenkovic (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Network analysis of the NetHealth data: exploring co-evolution of individuals' social network positions and physical activities. - Shikang Liu; David Hachen; Omar Lizardo; Christian Poellabauer; Aaron Striegel; Tijana Milenkovic (Appl. Netw. Sci., 2018)

Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin. - Pietro Hiram Guzzi; Tijana Milenkovic (Briefings Bioinform., 2018)

Aligning dynamic networks with DynaWAVE. - Vipin Vijayan; Tijana Milenkovic (Bioinform., 2018)

Network-based protein structural classification. - Arash Rahnama; Khalique Newaz; Panos J. Antsaklis; Tijana Milenkovic (CoRR, 2018)

Graphlets versus node2vec and struc2vec in the task of network alignment. - Shawn Gu; Tijana Milenkovic (CoRR, 2018)

GoT-WAVE: Temporal network alignment using graphlet-orbit transitions. - David Oliveira Aparício; Pedro Ribeiro 004; Tijana Milenkovic; Fernando Silva 001 (CoRR, 2018)

Great Lakes Bioinformatics Conference (GLBIO) 2015 Special Section Editorial. - Tijana Milenkovic; Sarath Chandra Janga (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Multiple Network Alignment via MultiMAGNA++. - Vipin Vijayan; Tijana Milenkovic (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Temporal network alignment via GoT-WAVE. - David Oliveira Aparício; Pedro Ribeiro 004; Tijana Milenkovic; Fernando Silva 001 (Bioinform., 2019)

Weighted graphlets and deep neural networks for protein structure classification. - Hongyu Guo; Khalique Newaz; Scott J. Emrich; Tijana Milenkovic; Jun Li 052 (CoRR, 2019)

The Power of Dynamic Social Networks to Predict Individuals' Mental Health. - Shikang Liu; David Hachen; Omar Lizardo; Christian Poellabauer; Aaron Striegel; Tijana Milenkovic (PSB, 2020)

Pairwise Versus Multiple Global Network Alignment. - Vipin Vijayan; Shawn Gu; Eric T. Krebs; Lei Meng 007; Tijana Milenkovic (IEEE Access, 2020)

Network analysis of synonymous codon usage. - Khalique Newaz; Gabriel Wright; Jacob Piland; Jun Li 052; Patricia L. Clark; Scott J. Emrich; Tijana Milenkovic (Bioinform., 2020)

Improving supervised prediction of aging-related genes via dynamic network analysis. - Qi Li 016; Tijana Milenkovic (CoRR, 2020)

Data-driven biological network alignment that uses topological, sequence, and functional information. - Shawn Gu; Tijana Milenkovic (BMC Bioinform., 2021)

Improved supervised prediction of aging-related genes via weighted dynamic network analysis. - Qi Li 016; Khalique Newaz; Tijana Milenkovic (BMC Bioinform., 2021)

Heterogeneous Network Approach to Predict Individuals' Mental Health. - Shikang Liu; Fatemeh Vahedian; David Hachen; Omar Lizardo; Christian Poellabauer; Aaron Striegel; Tijana Milenkovic (ACM Trans. Knowl. Discov. Data, 2021)

Modeling multi-scale data via a network of networks. - Shawn Gu; Meng Jiang 001; Pietro Hiram Guzzi; Tijana Milenkovic (Bioinform., 2022)

Supervised Prediction of Aging-Related Genes From a Context-Specific Protein Interaction Subnetwork. - Qi Li 016; Tijana Milenkovic (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation. - Khalique Newaz; Tijana Milenkovic (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

ISMB 2024 Proceedings. - Tijana Milenkovic; Yann Ponty (Bioinform., 2024)