UZH in BioNLP 2013. - Gerold Schneider; Simon Clematide; Tilia Ellendorff; Don Tuggener; Fabio Rinaldi 001; Gintare Grigonyte (BioNLP@ACL (Shared Task), 2013)

Using Large Biomedical Databases as Gold Annotations for Automatic Relation Extraction. - Tilia Ellendorff; Fabio Rinaldi 001; Simon Clematide (LREC, 2014)

Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12. - Socorro Gama-Castro; Fabio Rinaldi 001; Alejandra López-Fuentes; Yalbi Itzel Balderas-Martínez; Simon Clematide; Tilia Renate Ellendorff; Alberto Santos-Zavaleta; Hernani Marques-Madeira; Julio Collado-Vides (Database J. Biol. Databases Curation, 2014)

OntoGene web services for biomedical text mining. - Fabio Rinaldi 001; Simon Clematide; Hernani Marques; Tilia Ellendorff; Martin Romacker; Raul Rodriguez-Esteban (BMC Bioinform., 2014)

A Combined Resource of Biomedical Terminology and its Statistics. - Tilia Renate Ellendorff; Adrian Van der Lek; Lenz Furrer; Fabio Rinaldi 001 (TIA, 2015)

The PsyMine Corpus - A Corpus annotated with Psychiatric Disorders and their Etiological Factors. - Tilia Ellendorff; Simon Foster 003; Fabio Rinaldi 001 (LREC, 2016)

Using a Hybrid Approach for Entity Recognition in the Biomedical Domain. - Marco Basaldella; Lenz Furrer; Nico Colic; Tilia Ellendorff; Carlo Tasso; Fabio Rinaldi 001 (SMBM, 2016)

BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language. - Fabio Rinaldi 001; Tilia Renate Ellendorff; Sumit Madan; Simon Clematide; Adrian Van der Lek; Heinz-Theodor Mevissen; Juliane Fluck (Database J. Biol. Databases Curation, 2016)

UZH@SMM4H: System Descriptions. - Tilia Ellendorff; Joseph Cornelius; Heath Gordon; Nicola Colic; Fabio Rinaldi 001 (SMM4H@EMNLP, 2018)

Approaching SMM4H with Merged Models and Multi-task Learning. - Tilia Ellendorff; Lenz Furrer; Nicola Colic; Noëmi Aepli; Fabio Rinaldi 001 (SMM4H@ACL, 2019)

COVID-19 Twitter Monitor: Aggregating and Visualizing COVID-19 Related Trends in Social Media. - Joseph Cornelius; Tilia Ellendorff; Lenz Furrer; Fabio Rinaldi 001 (SMM4H@COLING, 2020)

Approaching SMM4H with auto-regressive language models and back-translation. - Joseph Cornelius; Tilia Ellendorff; Fabio Rinaldi 001 (SMM4H@NAACL-HLT, 2021)

NeuroTrialNER: An Annotated Corpus for Neurological Diseases and Therapies in Clinical Trial Registries. - Simona Doneva; Tilia Ellendorff; Beate Sick; Jean-Philippe Goldman; Amelia Cannon; Gerold Schneider; Benjamin Ineichen (EMNLP, 2024)

Large language models to process, analyze, and synthesize biomedical texts: a scoping review. - Simona Doneva; Sijing Qin; Beate Sick; Tilia Ellendorff; Jean-Philippe Goldman; Gerold Schneider; Benjamin Ineichen (Discov. Artif. Intell., 2024)