antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. - Marnix H. Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A. Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling (Nucleic Acids Res., 2011)

NRPSpredictor2 - a web server for predicting NRPS adenylation domain specificity. - Marc Röttig; Marnix H. Medema; Kai Blin; Tilmann Weber; Christian Rausch; Oliver Kohlbacher (Nucleic Acids Res., 2011)

antiSMASH 2.0 - a versatile platform for genome mining of secondary metabolite producers. - Kai Blin; Marnix H. Medema; Daniyal Kazempour; Michael A. Fischbach; Rainer Breitling; Eriko Takano; Tilmann Weber (Nucleic Acids Res., 2013)

antiSMASH 3.0 - a comprehensive resource for the genome mining of biosynthetic gene clusters. - Tilmann Weber; Kai Blin; Srikanth Duddela; Daniel Krug; Hyun Uk Kim; Robert E. Bruccoleri; Sang Yup Lee; Michael A. Fischbach; Rolf Müller 002; Wolfgang Wohlleben; Rainer Breitling; Eriko Takano; et al. (Nucleic Acids Res., 2015)

The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery. - Mohammad Alanjary; Brent Kronmiller; Martina Adamek; Kai Blin; Tilmann Weber; Daniel H. Huson; Benjamin Philmus; Nadine Ziemert (Nucleic Acids Res., 2017)

The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters. - Kai Blin; Marnix H. Medema; Renzo Kottmann; Sang Yup Lee; Tilmann Weber (Nucleic Acids Res., 2017)

antiSMASH 4.0 - improvements in chemistry prediction and gene cluster boundary identification. - Kai Blin; Thomas Wolf 001; Marc G. Chevrette; Xiaowen Lu; Christopher J. Schwalen; Satria A. Kautsar; Hernando G. Suarez Duran; Emmanuel L. C. de los Santos; Hyun Uk Kim; Mariana Nave; Jeroen S. Dickschat; Douglas A. Mitchell; et al. (Nucleic Acids Res., 2017)

Patscanui: an intuitive web interface for searching patterns in DNA and protein data. - Kai Blin; Wolfgang Wohlleben; Tilmann Weber (Nucleic Acids Res., 2018)

Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters. - Kai Blin; Hyun Uk Kim; Marnix H. Medema; Tilmann Weber (Briefings Bioinform., 2019)

The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters. - Kai Blin; Victòria Pascal Andreu; Emmanuel L. C. de los Santos; Francesco Del Carratore; Sang Yup Lee; Marnix H. Medema; Tilmann Weber (Nucleic Acids Res., 2019)

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. - Kai Blin; Simon Shaw; Katharina Steinke; Rasmus Villebro; Nadine Ziemert; Sang Yup Lee; Marnix H. Medema; Tilmann Weber (Nucleic Acids Res., 2019)

MIBiG 2.0: a repository for biosynthetic gene clusters of known function. - Satria A. Kautsar; Kai Blin; Simon Shaw; Jorge C. Navarro-Muñoz; Barbara R. Terlouw; Justin J. J. van der Hooft; Jeffrey A. van Santen; Vittorio Tracanna; Hernando G. Suarez Duran; Victòria Pascal Andreu; Nelly Sélem-Mojica; Mohammad Alanjary; et al. (Nucleic Acids Res., 2020)

ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining. - Mehmet Direnç Mungan; Mohammad Alanjary; Kai Blin; Tilmann Weber; Marnix H. Medema; Nadine Ziemert (Nucleic Acids Res., 2020)

Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop. - Fidele Ntie-Kang; Kiran K. Telukunta; Serge A. T. Fobofou; Victor Chukwudi Osamor; Samuel A. Egieyeh; Marilia Valli; Yannick Djoumbou Feunang; Maria Sorokina; Conrad Stork; Neann Mathai; Paul F. Zierep; Ana L. Chávez-Hernández; et al. (J. Cheminformatics, 2021)

antiSMASH 6.0: improving cluster detection and comparison capabilities. - Kai Blin; Simon Shaw; Alexander M. Kloosterman; Zachary Charlop-Powers; Gilles P. van Wezel; Marnix H. Medema; Tilmann Weber (Nucleic Acids Res., 2021)

The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes. - Kai Blin; Simon Shaw; Satria A. Kautsar; Marnix H. Medema; Tilmann Weber (Nucleic Acids Res., 2021)

BiG-FAM: the biosynthetic gene cluster families database. - Satria A. Kautsar; Kai Blin; Simon Shaw; Tilmann Weber; Marnix H. Medema (Nucleic Acids Res., 2021)

High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917. - Max van 't Hof; Omkar S. Mohite; Jonathan M. Monk; Tilmann Weber; Bernhard O. Palsson; Morten O. A. Sommer (BMC Bioinform., 2022)

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. - Barbara R. Terlouw; Kai Blin; Jorge C. Navarro-Muñoz; Nicole E. Avalon; Marc G. Chevrette; Susan Egbert; Sanghoon Lee; David Meijer; Michael J. Recchia; Zachary L. Reitz; Jeffrey A. van Santen; Nelly Sélem-Mojica; et al. (Nucleic Acids Res., 2023)

antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation. - Kai Blin; Simon Shaw; Hannah E. Augustijn; Zachary L. Reitz; Friederike Biermann; Mohammad Alanjary; Artem Fetter; Barbara R. Terlouw; William W. Metcalf; Eric J. N. Helfrich; Gilles P. van Wezel; Marnix H. Medema; et al. (Nucleic Acids Res., 2023)

UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis. - Eleftheria Kontou; Axel Walter; Oliver Alka; Julianus Pfeuffer; Timo Sachsenberg; Omkar S. Mohite; Matin Nuhamunada; Oliver Kohlbacher; Tilmann Weber (J. Cheminformatics, 2023)

teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering. - Søren D. Petersen; Lucas Levassor; Christine M. Pedersen; Jan Madsen; Lea G. Hansen; Jie Zhang; Ahmad K. Haidar; Rasmus John Normand Frandsen; Jay D. Keasling; Tilmann Weber; Nikolaus Sonnenschein; Michael K. Jensen (PLoS Comput. Biol., 2024)

getphylo: rapid and automatic generation of multi-locus phylogenetic trees. - Thomas J. Booth; Simon Shaw; Pablo Cruz-Morales; Tilmann Weber (BMC Bioinform., 2025)