Visualisation of BioPAX Networks using BioLayout Express3D. - Derek W. Wright; Tim Angus; Anton J. Enright; Tom C. Freeman (F1000Research, 2014)

A graph-based approach for the visualisation and analysis of bacterial pangenomes. - Josh Harling-Lee; Jamie Gorzynski; Gonzalo Yebra; Tim Angus; J. Ross Fitzgerald; Tom C. Freeman (BMC Bioinform., 2022)

Graphia: A platform for the graph-based visualisation and analysis of high dimensional data. - Tom C. Freeman; Sebastian Horsewell; Anirudh Patir; Josh Harling-Lee; Tim Regan; Barbara B. Shih; James G. D. Prendergast; David A. Hume; Tim Angus (PLoS Comput. Biol., 2022)