Virtual Private Networks with QoS. - Tim Clark (Inf. Secur. J. A Glob. Perspect., 2000)

Editorial: Identity and Interoperability in Bioinformatics. - Tim Clark (Briefings Bioinform., 2003)

Computational knowledge integration in biopharmaceutical research. - David Ficenec; Mark Osborne; Joël R. Pradines; Daniel R. Richards; Ramon M. Felciano; Raymond J. Cho; Richard O. Chen; Ted Liefeld; James Owen; Alan Ruttenberg; Christian G. Reich; Joseph Horvath; et al. (Briefings Bioinform., 2003)

Globally distributed object identification for biological knowledgebases. - Tim Clark; Sean Martin; Ted Liefeld (Briefings Bioinform., 2004)

SWAN: A distributed knowledge infrastructure for Alzheimer disease research. - Yong Gao; June Kinoshita; Elizabeth Wu; Eric L. Miller 001; Ryan Lee; Andy Seaborne; Steve Cayzer; Tim Clark (J. Web Semant., 2006)

Knowledge Integration in Biomedicine: Technology and Community. - Tim Clark (Briefings Bioinform., 2007)

Alzforum and SWAN: the present and future of scientific web communities. - Tim Clark; June Kinoshita (Briefings Bioinform., 2007)

AlzPharm: integration of neurodegeneration data using RDF. - Hugo Y. K. Lam; Luis N. Marenco; Tim Clark; Yong Gao; June Kinoshita; Gordon M. Shepherd; Perry L. Miller; Elizabeth Wu; Gwendolyn T. Wong; Nian Liu; Chiquito J. Crasto; Thomas M. Morse; et al. (BMC Bioinform., 2007)

Advancing translational research with the Semantic Web. - Alan Ruttenberg; Tim Clark; William J. Bug; Matthias Samwald; Olivier Bodenreider; Helen Chen; Donald Doherty; Kerstin Forsberg; Yong Gao; Vipul Kashyap; June Kinoshita; Joanne Luciano; et al. (BMC Bioinform., 2007)

The SWAN biomedical discourse ontology. - Paolo Ciccarese; Elizabeth Wu; Gwendolyn T. Wong; Marco Ocana; June Kinoshita; Alan Ruttenberg; Tim Clark (J. Biomed. Informatics, 2008)

Scientific publications on Web 3.0. - Mark Goetz; Tim Clark; Sudeshna Das 001; Lisa Girard (ELPUB, 2009)

Produce and Consume Linked Data with Drupal! - Stephane Corlosquet; Renaud Delbru; Tim Clark; Axel Polleres; Stefan Decker (ISWC, 2009)

Building biomedical web communities using a semantically aware content management system. - Sudeshna Das 001; Lisa Girard; Tom Green; Louis Weitzman; Alister Lewis-Bowen; Tim Clark (Briefings Bioinform., 2009)

An open annotation ontology for science on web 3.0. - Paolo Ciccarese; Marco Ocana; Leyla Jael García Castro; Sudeshna Das 001; Tim Clark (J. Biomed. Semant., 2011)

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. - Joanne S. Luciano; Bosse Andersson; Colin R. Batchelor; Olivier Bodenreider; Tim Clark; Christine K. Denney; Christopher Domarew; Thomas Gambet; Lee Harland; Anja Jentzsch; Vipul Kashyap; Peter J. Kos; et al. (J. Biomed. Semant., 2011)

eXframe: reusable framework for storage, analysis and visualization of genomics experiments. - Amit U. Sinha; Emily Merrill; Scott A. Armstrong; Timothy W. Clark; Sudeshna Das 001 (BMC Bioinform., 2011)

Improving The Future of Research Communications and e-Scholarship (Dagstuhl Perspectives Workshop 11331). - Philip E. Bourne; Timothy W. Clark; Robert Dale; Anita de Waard; Ivan Herman; Eduard H. Hovy; David M. Shotton (Dagstuhl Manifestos, 2011)

The Future of Research Communication (Dagstuhl Perspectives Workshop 11331). - Tim Clark; Anita de Waard; Ivan Herman; Eduard H. Hovy (Dagstuhl Reports, 2011)

Invited Talks. - Timothy W. Clark; William W. Cohen; Lawrence Hunter; Chris J. Lintott; Jude W. Shavlik (AAAI Fall Symposium: Discovery Informatics, 2012)

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. - Anita E. Bandrowski; Jonathan Cachat; Yuling Li 005; Hans-Michael Müller; Paul W. Sternberg; Paolo Ciccarese; Tim Clark; Luis N. Marenco; Rixin Wang; Vadim Astakhov; Jeffrey S. Grethe; Maryann E. Martone (Database J. Biol. Databases Curation, 2012)

Open semantic annotation of scientific publications using DOMEO. - Paolo Ciccarese; Marco Ocana; Tim Clark (J. Biomed. Semant., 2012)

PAV ontology: provenance, authoring and versioning. - Paolo Ciccarese; Stian Soiland-Reyes; Khalid Belhajjame; Alasdair J. G. Gray; Carole A. Goble; Tim Clark (J. Biomed. Semant., 2013)

Web Annotation as a First-Class Object. - Paolo Ciccarese; Stian Soiland-Reyes; Tim Clark (IEEE Internet Comput., 2013)

Using the Micropublications Ontology and the Open Annotation Data Model to Represent Evidence within a Drug-Drug Interaction Knowledge Base. - Jodi Schneider; Paolo Ciccarese; Tim Clark; Richard D. Boyce (LISC@ISWC, 2014)

Annotopia: An Open Source Universal Annotation Server for Biomedical Research. - Paolo Ciccarese; Tim Clark (SWAT4LS, 2014)

Using eXframe to Build Semantic Web Genomics Repositories. - Emily Merrill; Shannan J. Ho Sui; Stephane Corlosquet; Tim Clark; Sudeshna Das 001 (SWAT4LS, 2014)

Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications. - Tim Clark; Paolo Ciccarese; Carole A. Goble (J. Biomed. Semant., 2014)

Semantic Web repositories for genomics data using the eXframe platform. - Emily Merrill; Stephane Corlosquet; Paolo Ciccarese; Tim Clark; Sudeshna Das 001 (J. Biomed. Semant., 2014)

Pain Research Forum: application of scientific social media frameworks in neuroscience. - Sudeshna Das 001; Patricia G. Mccaffrey; Megan Talkington; Neil Andrews; Stephane Corlosquet; Adrian Ivinson; Tim Clark (Frontiers Neuroinformatics, 2014)

Simulating "soft" electronics. - Tim Clark (J. Cheminformatics, 2014)

CiTO + SWAN: The web semantics of bibliographic records, citations, evidence and discourse relationships. - Paolo Ciccarese; David M. Shotton; Silvio Peroni; Tim Clark (Semantic Web, 2014)

Next Generation Scientific Publishing and the Web of Data. - Tim Clark (Semantic Web, 2014)

Recent applications of web semantics in eLifeScience. - Tim Clark; Marco Roos (J. Web Semant., 2014)

Feasibility of Information Interoperability in the Humanitarian Domain. - Tim Clark; Carsten Keßler; Hemant Purohit (AAAI Spring Symposia, 2015)

Formalizing Knowledge and Evidence about Potential Drug-drug Interactions. - Jodi Schneider; Mathias Brochhausen; Samuel Rosko; Paolo Ciccarese; William R. Hogan; Daniel C. Malone; Yifan Ning; Tim Clark; Richard D. Boyce (BDM2I@ISWC, 2015)

Achieving human and machine accessibility of cited data in scholarly publications. - Joan Starr; Eleni Castro; Mercè Crosas; Michel Dumontier; Robert R. Downs; Ruth E. Duerr; Laurel L. Haak; Melissa A. Haendel; Iván Herman; Simon Hodson; Joe Hourclé; John Ernest Kratz; et al. (PeerJ Prepr., 2015)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Mark Thompson 002; Rajaram Kaliyaperumal; et al. (PeerJ Prepr., 2016)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Arnold Kuzniar; Anand K. Gavai; et al. (PeerJ Prepr., 2017)

Software Citation Implementation Challenges. - Daniel S. Katz; Daina Bouquin; Neil P. Chue Hong; Jessica Hausman; Catherine Mary Jones; Daniel Chivvis; Tim Clark; Mercè Crosas; Stephan Druskat; Martin Fenner; Tom Gillespie; Alejandra N. González-Beltrán; et al. (CoRR, 2019)

Software and Data Citation. - Daniel S. Katz; Neil P. Chue Hong; Tim Clark; Martin Fenner; Maryann E. Martone (Comput. Sci. Eng., 2020)

FAIR Data Reuse - the Path through Data Citation. - Paul Groth; Helena Cousijn; Tim Clark; Carole A. Goble (Data Intell., 2020)

Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR. - Nick S. Juty; Sarala M. Wimalaratne; Stian Soiland-Reyes; John A. Kunze; Carole A. Goble; Tim Clark (Data Intell., 2020)

Evidence Graphs: Supporting Transparent and FAIR Computation, with Defeasible Reasoning on Data, Methods, and Results. - Sadnan Al Manir; Justin Niestroy; Maxwell Adam Levinson; Timothy W. Clark (IPAW, 2021)

The FAIRSCAPE digital commons framework and Evidence Graphs for reproducibility (keynote). - Tim Clark (DISCO@JCDL, 2021)

FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics. - Maxwell Adam Levinson; Justin Niestroy; Sadnan Al Manir; Karen Fairchild; Douglas E. Lake; J. Randall Moorman; Timothy W. Clark (Neuroinformatics, 2022)

Discovery of signatures of fatal neonatal illness in vital signs using highly comparative time-series analysis. - Justin Niestroy; J. Randall Moorman; Maxwell Adam Levinson; Sadnan Al Manir; Timothy W. Clark; Karen Fairchild; Douglas E. Lake (npj Digit. Medicine, 2022)