JAFA: a protein function annotation meta-server. - Iddo Friedberg; Tim Harder; Adam Godzik (Nucleic Acids Res., 2006)

Using an alignment of fragment strings for comparing protein structures. - Iddo Friedberg; Tim Harder; Rachel Kolodny; Einat Sitbon; Zhanwen Li; Adam Godzik (Bioinform., 2007)

Beyond rotamers: a generative, probabilistic model of side chains in proteins. - Tim Harder; Wouter Boomsma; Martin Paluszewski; Jes Frellsen; Kristoffer E. Johansson; Thomas Hamelryck (BMC Bioinform., 2010)

Fast large-scale clustering of protein structures using Gauss integrals. - Tim Harder; Mikael Borg; Wouter Boomsma; Peter Røgen; Thomas Hamelryck (Bioinform., 2012)

PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure. - Wouter Boomsma; Jes Frellsen; Tim Harder; Sandro Bottaro; Kristoffer E. Johansson; Pengfei Tian; Kasper Stovgaard; Christian Andreetta; Simon Olsson; Jan B. Valentin; Lubomir D. Antonov; Anders S. Christensen; et al. (J. Comput. Chem., 2013)

Accessing Open PHACTS: interactive exploration of compounds and targets from the semantic web. - Katrin Stierand; Tim Harder; Lothar Wissler; Christian Lemmen; Matthias Rarey (J. Cheminformatics, 2014)

Deep Learning for Pneumothorax Detection and Localization in Chest Radiographs. - André Gooßen; Hrishikesh Deshpande; Tim Harder; Evan Schwab; Ivo M. Baltruschat; Thusitha De Silva Mabotuwana; Nathan M. Cross; Axel Saalbach (CoRR, 2019)

Detection Of Foreign Objects In Chest Radiographs Using Deep Learning. - Hrishikesh Deshpande; Tim Harder; Axel Saalbach; Abhivyakti Sawarkar; Thomas Bülow (ISBI Workshops, 2020)

Robust chest x-ray quality assessment using convolutional neural networks and atlas regularization. - Jens von Berg; Sven Krönke; André Gooßen; Daniel Bystrov; Matthias Brück; Tim Harder; Nataly Wieberneit; Stewart Young (Image Processing, 2020)

Deep learning for the detection of landmarks in head CT images and automatic quality assessment. - Hrishikesh Deshpande; Axel Saalbach; Tim Harder; Stewart Young; Thomas Bülow (Image Processing, 2021)

CNN-based pose estimation for assessing quality of ankle-joint X-ray images. - Sven Krönke; Jens von Berg; Matthias Brück; Daniel Bystrov; André Gooßen; Tim Harder; Bernd Lundt; Jan Marek May; Nataly Wieberneit; Tobias Wissel; Omar Hertgers; Hildo J. Lamb; et al. (Image Processing, 2022)

Estimation of incomplete organ-coverage using 3D fully convolutional networks. - Hrishikesh Deshpande; Axel Saalbach; Tim Harder; Edna Coetser; Shlomo Gotman; Thomas Bülow; Christian Wülker (Image Processing, 2023)