Biological information signal processor. - E. T. Chow; Tim Hunkapiller; J. Peterson; Michael S. Waterman (ASAP, 1991)

A systolic array processor for biological information signal processing. - E. T. Chow; John C. Peterson; Michael S. Waterman; Tim Hunkapiller; Barbara A. Zimmermann (ICS, 1991)

Computational Problems and the Human Genome Project. - Leroy E. Hood; Tim Hunkapiller; J. Solomon (PP, 1991)

Hidden Markov Models in Molecular Biology: New Algorithms and Applications. - Pierre Baldi; Yves Chauvin; Tim Hunkapiller; Marcella A. McClure (NIPS, 1992)

Beyond Interoperability - Tracking and Managing the Results of Computational Applications. - Judith Bayard Cushing; Justin Laird; Emir Pasalic; Elizabeth Kutter; Tim Hunkapiller; Frank Zucker; David P. Yee (SSDBM, 1997)

Overview: A System for Tracking and Managing the Results from Sequence Comparison Programs. - David P. Yee; Judith Bayard Cushing; Tim Hunkapiller; Elizabeth Kutter (Pattern Discovery in Biomolecular Data, 1999)