Measuring and analyzing tissue specificity of human genes and protein complexes. - Dorothea Emig; Tim Kacprowski; Mario Albrecht (EURASIP J. Bioinform. Syst. Biol., 2011)

NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules. - Tim Kacprowski; Nadezhda T. Doncheva; Mario Albrecht (Bioinform., 2013)

Notions of similarity for systems biology models. - Ron Henkel; Robert Hoehndorf; Tim Kacprowski; Christian Knüpfer; Wolfram Liebermeister; Dagmar Waltemath (Briefings Bioinform., 2017)

EpiGEN: an epistasis simulation pipeline. - David B. Blumenthal; Lorenzo Viola; Markus List; Jan Baumbach; Paolo Tieri; Tim Kacprowski (Bioinform., 2020)

Privacy-preserving Artificial Intelligence Techniques in Biomedicine. - Reihaneh Torkzadehmahani; Reza Nasirigerdeh; David B. Blumenthal; Tim Kacprowski; Markus List; Julian O. Matschinske; Julian Späth; Nina Kerstin Wenke; Béla Bihari; Tobias Frisch; Anne Hartebrodt; Anne-Christin Hauschild; et al. (CoRR, 2020)

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning. - Janine Arloth; Gökcen Eraslan; Till F. M. Andlauer; Jade Martins; Stella Iurato; Brigitte Kühnel; Melanie Waldenberger; Josef Frank; Ralf Gold; Bernhard Hemmer; Felix Luessi; Sandra Nischwitz; et al. (PLoS Comput. Biol., 2020)

BiCoN: network-constrained biclustering of patients and omics data. - Olga Lazareva; Stefan Canzar; Kevin Yuan; Jan Baumbach; David B. Blumenthal; Paolo Tieri; Tim Kacprowski; Markus List (Bioinform., 2021)

ASimulatoR: splice-aware RNA-Seq data simulation. - Quirin Manz; Olga Tsoy; Amit Fenn; Jan Baumbach; Uwe Völker; Markus List; Tim Kacprowski (Bioinform., 2021)

The FeatureCloud AI Store for Federated Learning in Biomedicine and Beyond. - Julian O. Matschinske; Julian Späth; Reza Nasirigerdeh; Reihaneh Torkzadehmahani; Anne Hartebrodt; Balázs Orbán; Sándor Fejér; Olga I. Zolotareva; Mohammad Bakhtiari; Béla Bihari; Marcus D. Bloice; Nina C. Donner; et al. (CoRR, 2021)

DIGGER: exploring the functional role of alternative splicing in protein interactions. - Zakaria Louadi; Kevin Yuan; Alexander Greß; Olga Tsoy; Olga V. Kalinina; Jan Baumbach; Tim Kacprowski; Markus List (Nucleic Acids Res., 2021)

Enabling single-cell trajectory network enrichment. - Alexander G. B. Grønning; Mhaned Oubounyt; Kristiyan Kanev; Jesper Lund; Tim Kacprowski; Dietmar Zehn; Richard Röttger; Jan Baumbach (Nat. Comput. Sci., 2021)

An LSTM-based Listener for Early Detection of Heart Disease. - Philip Gemke; Nicolai Spicher; Tim Kacprowski (CinC, 2022)

Robust disease module mining via enumeration of diverse prize-collecting Steiner trees. - Judith Bernett; Dominik Krupke; Sepideh Sadegh; Jan Baumbach; Sándor P. Fekete; Tim Kacprowski; Markus List; David B. Blumenthal (Bioinform., 2022)

Quantifying Alterations Over Time in ST-Segment/T-Wave Amplitudes During Elective Percutaneous Coronary Intervention. - Philip Hempel; Theresa Bender; Ennio Idrobo-Ávila; Henning Dathe; Dagmar Krefting; Tim Kacprowski; Nicolai Spicher (CinC, 2023)

Systematic analysis of alternative splicing in time course data using Spycone. - Chit Tong Lio; Gordon Grabert; Zakaria Louadi; Amit Fenn; Jan Baumbach; Tim Kacprowski; Markus List; Olga Tsoy (Bioinform., 2023)

NeDRex-Web: An Interactive Web Tool for Drug Repurposing by Exploring Heterogeneous Molecular Networks. - Andreas Maier 009; Mahdie Rafiei; Elisa Anastasi; Olga I. Zolotareva; James Skelton; Maria L. Elkjaer; Ana I. Casas; Cristian Nogales; Harald H. H. W. Schmidt; Tim Kacprowski; David B. Blumenthal; Anil Wipat; et al. (BIBM, 2024)

VISPER - Visualization System for Interactions between Proteins and Drugs for Exploratory Research. - Daniel Dehncke; Vinzenz Fiebach; Lennart Kinzel; Knut Baumann; Tim Kacprowski (VCBM, 2024)