EMMA 2 - A MAGE-compliant system for the collaborative analysis and integration of microarray data. - Michael Dondrup; Stefan P. Albaum; Thasso Griebel; Kolja Henckel; Sebastian Jünemann; Tim Kahlke; Christiane K. Kleindt; Helge Küster; Burkhard Linke; Dominik Mertens; Virginie Mittard-Runte; Heiko Neuweger; et al. (BMC Bioinform., 2009)

Value, but high costs in post-deposition data curation. - Petra ten Hoopen; Clara Amid; Pier Luigi Buttigieg; Evangelos Pafilis; Panos Bravakos; Ana Cerdeño-Tárraga; Richard Gibson; Tim Kahlke; Aglaia Legaki; Kada Narayana Murthy; Gabriella Papastefanou; Emiliano Pereira; et al. (Database J. Biol. Databases Curation, 2016)

META-pipe - Pipeline Annotation, Analysis and Visualization of Marine Metagenomic Sequence Data. - Espen Mikal Robertsen; Tim Kahlke; Inge Alexander Raknes; Edvard Pedersen; Erik Kjærner-Semb; Martin Ernstsen; Lars Ailo Bongo; Nils Peder Willassen (CoRR, 2016)

Chemical Named Entity Recognition with Deep Contextualized Neural Embeddings. - Zainab Awan; Tim Kahlke; Peter J. Ralph; Paul J. Kennedy (KDIR, 2019)

The Effect of In-Domain Word Embeddings for Chemical Named Entity Recognition. - Zainab Awan; Tim Kahlke; Peter J. Ralph; Paul J. Kennedy (IC3K, 2019)

how_are_we_stranded_here: quick determination of RNA-Seq strandedness. - Brandon Signal; Tim Kahlke (BMC Bioinform., 2022)

Bi-Encoders based Species Normalization - Pairwise Sentence Learning to Rank. - Zainab Awan; Tim Kahlke; Peter J. Ralph; Paul J. Kennedy (CoRR, 2023)