Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities. - Marcel E. Dinger; Ken C. Pang; Tim R. Mercer; John S. Mattick (PLoS Comput. Biol., 2008)

NRED: a database of long noncoding RNA expression. - Marcel E. Dinger; Ken C. Pang; Tim R. Mercer; Mark L. Crowe; Sean M. Grimmond; John S. Mattick (Nucleic Acids Res., 2009)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)

ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing. - Ted Wong; Ira W. Deveson; Simon A. Hardwick; Tim R. Mercer (Bioinform., 2017)

Machine learning annotation of human branchpoints. - Bethany Signal; Brian S. Gloss; Marcel E. Dinger; Tim R. Mercer (Bioinform., 2018)